RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PQLC3Q8N755 202 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 UBAC2Q8NBM4 344 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR10D4PQ8NGN7 298 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR4A4PQ8NGN8 299 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR8S1Q8NH09 359 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR51F2Q8NH61 342 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 RNASE11Q8TAA1 199 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 CMTM2Q8TAZ6 248 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 DCAKDQ8WVC6 231 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 RXFP2Q8WXD0 754 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SLC38A4Q969I6 547 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 C8orf44Q96CB5 159 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 FXYD5Q96DB9 178 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ECHDC3Q96DC8 303 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 OTUB2Q96DC9 234 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 DYNLL2Q96FJ2 89 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ZNF625Q96I27 306 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 ZNF75AQ96N20 296 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SPACA5Q96QH8 159 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 XPO6Q96QU8 1125 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 PANX1Q96RD7 426 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 TRIB3Q96RU7 358 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 AGMATQ9BSE5 352 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 EMC6Q9BV81 110 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 NUP58Q9BVL2 599 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ABCG5Q9H222 651 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CXCL16Q9H2A7 254 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR51B5Q9H339 312 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 KIR3DX1Q9H7L2 352 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 LRRC40Q9H9A6 602 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 FANCEQ9HB96 536 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 BEX1Q9HBH7 125 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PARP11Q9NR21 331 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 HEBP1Q9NRV9 189 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 INIPQ9NRY2 104 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 AGPAT4Q9NRZ5 378 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 STX18Q9P2W9 335 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 UXTQ9UBK9 157 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR5V1Q9UGF6 321 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 VAX2Q9UIW0 290 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CES1P1Q9UKY3 287 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 RAB22AQ9UL26 194 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 MCTS1Q9ULC4 181 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 CCL26Q9Y258 94 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CAB39Q9Y376 341 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 PPIL1Q9Y3C6 166 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR51B2Q9Y5P1 312 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SLC22A7Q9Y694 548 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ICOSQ9Y6W8 199 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 U3KQK5 164 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 USP24Q9UPU5 2620 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SCN4AP35499 1836 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 KIAA1671Q9BY89 1806 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 INSRP06213 1382 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 KANK1Q14678 1352 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 FN1P02751 2386 aaKnown RBP0.03□□□□□ -2.41
VPS35-212ENST00000640313 SSPOA2VEC9 5147 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZFHX2Q9C0A1 2572 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 KMT2AQ03164 3969 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 LAMB2P55268 1798 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 HUWE1Q7Z6Z7 4374 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 CUL9Q8IWT3 2517 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 KCNE1BA0A087WTH5 132 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 IGHV3-21A0A0B4J1V1 117 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TRGV4A0A0C4DH28 118 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 KBTBD11-OT1A0A1B0GTJ5 212 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TSPAN11A1L157 253 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 HEATR9A2RTY3 570 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 MYBPHLA2RUH7 354 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 GMNCA6NCL1 334 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SMCO2A6NFE2 343 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 KNCNA6PVL3 124 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 C17orf98A8MV24 154 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 G3V3Q6 166 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 H3BMM0 161 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 LY6LH3BQJ8 138 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 K7EPK0 472 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 AP3B1O00203 1094 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 AIM2O14862 343 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC31A1O15431 190 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC19A2O60779 497 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 HUS1O60921 280 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZNF189O75820 626 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 SCO1O75880 301 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TDP2O95551 362 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 LSM8O95777 96 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 HLA-HP01893 362 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OPN1SWP03999 348 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 CLTAP09496 248 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SEC11BP0C7V7 166 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 LYNX1P0DP58 116 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 CTLA4P16410 223 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 HOXB8P17481 243 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 TNNI1P19237 187 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RAB5AP20339 215 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 BCKDHBP21953 392 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC6A1P30531 599 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RRM2P31350 389 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 PCK1P35558 622 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 PRPHP41219 470 aa0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms