RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 IKZF1Q13422 519 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 ADAD2Q8NCV1 583 aaKnown RBP18.74■□□□□ 0.59
CLN6-224ENST00000638076 OR5M8Q8NGP6 311 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 IGKV3D-15A0A087WSY6 115 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 IL13RA1P78552 427 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 MYO7BQ6PIF6 2116 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 C17orf50Q8WW18 174 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 TM2D1Q9BX74 207 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 PECRQ9BY49 303 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 KCNN3Q9UGI6 736 aa18.74■□□□□ 0.59
CLN6-224ENST00000638076 ZNF230Q9UIE0 474 aaPredicted RBP18.74■□□□□ 0.59
CLN6-224ENST00000638076 FARS2O95363 451 aaKnown RBP18.73■□□□□ 0.59
CLN6-224ENST00000638076 PPP3CBP16298 524 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 S100A11P31949 105 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 CBX5P45973 191 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 OR3A3P47888 321 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 GK2Q14410 553 aaPredicted RBP18.73■□□□□ 0.59
CLN6-224ENST00000638076 VAX1Q5SQQ9 334 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 HOGA1Q86XE5 327 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 IL22RA1Q8N6P7 574 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 MARCH1Q8TCQ1 289 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 PCNPQ8WW12 178 aaKnown RBP18.73■□□□□ 0.59
CLN6-224ENST00000638076 SPSB1Q96BD6 273 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLN6-224ENST00000638076 C9orf170A2RU37 121 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 LEUTXA8MZ59 168 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 IL2RAP01589 272 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 TMEM225BP0DP42 221 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 ZNF708P17019 499 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 AKR1C4P17516 323 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 CPT2P23786 658 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 PLGLB1Q02325 96 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 ACTBL2Q562R1 376 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 TMUB2Q71RG4 321 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 TMEM251Q8N6I4 163 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 TERB2Q8NHR7 220 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 ST6GALNAC5Q9BVH7 336 aa18.73■□□□□ 0.59
CLN6-224ENST00000638076 FAM230AA0A1W2PPH8 454 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 LINC00862A6NCI5 91 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 OR6C65A6NJZ3 312 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 MMP7P09237 267 aaPredicted RBP18.72■□□□□ 0.59
CLN6-224ENST00000638076 LIN54Q6MZP7 749 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 FAHD2BQ6P2I3 314 aaPredicted RBP18.72■□□□□ 0.59
CLN6-224ENST00000638076 TUSC5Q8IXB3 177 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 FAHD2AQ96GK7 314 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 SLC7A10Q9NS82 523 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 RPS10-NUDT3A0A1W2PQS6 291 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 RFPL4AA6NLU0 287 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 RFPL4AL1F8VTS6 287 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 CCSO14618 274 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 EFSO43281 561 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 AMY2BP19961 511 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 HLXQ14774 488 aaPredicted RBP18.72■□□□□ 0.59
CLN6-224ENST00000638076 LPCAT3Q6P1A2 487 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 C3P1Q6ZMU1 363 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 ARRDC1Q8N5I2 433 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 MITD1Q8WV92 249 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 ST8SIA4Q92187 359 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 FER1L6-AS2Q96M78 137 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 IP6K3Q96PC2 410 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 ARL6Q9H0F7 186 aa18.72■□□□□ 0.59
CLN6-224ENST00000638076 TRAV14DV4A0A0A6YYC5 116 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 SYNGR4O95473 234 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 VAMP1P23763 118 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 GABRR1P24046 479 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 SPEM2Q0P670 501 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 CNN3Q15417 329 aaKnown RBP18.71■□□□□ 0.59
CLN6-224ENST00000638076 PABPC1L2AQ5JQF8 200 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 CLLU1Q5K131 121 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 OR5H2Q8NGV7 314 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 FAM117AQ9C073 453 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 CALHM2Q9HA72 323 aa18.71■□□□□ 0.59
CLN6-224ENST00000638076 IGKV1-27A0A075B6S5 117 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 SPRY1O43609 319 aaPredicted RBP18.71■□□□□ 0.58
CLN6-224ENST00000638076 ANGPTL7O43827 346 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 PLATP00750 562 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 ZNF92Q03936 586 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 C9orf135Q5VTT2 229 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 THOC7Q6I9Y2 204 aaKnown RBP18.71■□□□□ 0.58
CLN6-224ENST00000638076 FNDC9Q8TBE3 224 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 CASTOR1Q8WTX7 329 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 MAFIPQ8WZ33 124 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 PHB2Q99623 299 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 PDCD10Q9BUL8 212 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 LINC00470Q9BZP3 86 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 ZNF391Q9UJN7 358 aa18.71■□□□□ 0.58
CLN6-224ENST00000638076 MCTS1Q9ULC4 181 aaKnown RBP18.71■□□□□ 0.58
CLN6-224ENST00000638076 SERPINE3A8MV23 424 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 NRASP01111 189 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 CD8AP01732 235 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 SP1P08047 785 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 PRKACBP22694 351 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 SNU13P55769 128 aaKnown RBP18.7■□□□□ 0.58
CLN6-224ENST00000638076 FAM3AP98173 230 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 ESCO2Q56NI9 601 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 CPEB3Q8NE35 698 aaKnown RBP18.7■□□□□ 0.58
CLN6-224ENST00000638076 METTL9Q9H1A3 318 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 PARPBPQ9NWS1 579 aa18.7■□□□□ 0.58
CLN6-224ENST00000638076 MEOX1P50221 254 aa18.69■□□□□ 0.58
CLN6-224ENST00000638076 NPY4RP50391 375 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms