RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 SCGB2B2Q4G0G5 96 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 FAM122CQ6P4D5 195 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 TMEM65Q6PI78 240 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 CPEB3Q8NE35 698 aaKnown RBP13.62□□□□□ -0.23
CLN3-251ENST00000636853 HAS2Q92819 552 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 RAB3CQ96E17 227 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 LINC00470Q9BZP3 86 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 PARPBPQ9NWS1 579 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 CNOT1A5YKK6 2376 aaKnown RBP13.62□□□□□ -0.23
CLN3-251ENST00000636853 UBBP0CG47 229 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 SERPINA2P20848 420 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 GSK3AP49840 483 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 UBE2MP61081 183 aaKnown RBP13.62□□□□□ -0.23
CLN3-251ENST00000636853 PMP22Q01453 160 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 GALNT11Q8NCW6 608 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 C10orf35Q96D05 121 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 NUDT16L1Q9BRJ7 211 aaKnown RBP13.62□□□□□ -0.23
CLN3-251ENST00000636853 POFUT1Q9H488 388 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 BCO1Q9HAY6 547 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 ELL3Q9HB65 397 aaPredicted RBP13.62□□□□□ -0.23
CLN3-251ENST00000636853 ACKR4Q9NPB9 350 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 IFT46Q9NQC8 304 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 ZNF107Q9UII5 783 aaPredicted RBP13.62□□□□□ -0.23
CLN3-251ENST00000636853 SCP2D1Q9UJQ7 156 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 ZFHX4Q86UP3 3567 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 ZNF587BE7ETH6 402 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 LRP3O75074 770 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 TOXO94900 526 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 CPN1P15169 458 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 RAB14P61106 215 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 NUFIP2Q7Z417 695 aaKnown RBP13.61□□□□□ -0.23
CLN3-251ENST00000636853 UXS1Q8NBZ7 420 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 CCDC54Q8NEL0 328 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 OR51T1Q8NGJ9 327 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 OR2T35Q8NGX2 323 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 WDR89Q96FK6 387 aaPredicted RBP13.61□□□□□ -0.23
CLN3-251ENST00000636853 CCDC120Q96HB5 630 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 ARHGAP5-AS1Q96IT6 56 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 PPA2Q9H2U2 334 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 MED9Q9NWA0 146 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 SPRR3Q9UBC9 169 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 KIF25Q9UIL4 384 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 RAD51DO75771 328 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 ACTL6AO96019 429 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 LIPCP11150 499 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 NAT2P11245 290 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 HIST1H1DP16402 221 aaKnown RBP13.61□□□□□ -0.23
CLN3-251ENST00000636853 C4BPBP20851 252 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 DNASE1P24855 282 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 ZNF92Q03936 586 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 RNASE10Q5GAN6 216 aaKnown RBP13.61□□□□□ -0.23
CLN3-251ENST00000636853 TMED4Q7Z7H5 227 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 MUC20Q8N307 709 aaPredicted RBP13.61□□□□□ -0.23
CLN3-251ENST00000636853 FDCSPQ8NFU4 85 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 APH1AQ96BI3 265 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 URM1Q9BTM9 101 aaKnown RBP13.61□□□□□ -0.23
CLN3-251ENST00000636853 CST11Q9H112 138 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 UPB1Q9UBR1 384 aa13.61□□□□□ -0.23
CLN3-251ENST00000636853 LOC100509620A0A075B734 347 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 TRGV5A0A0B4J1U4 118 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 FAM230AA0A1W2PPH8 454 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 ZNF724A8MTY0 619 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 G3V3Q6 166 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 HLA-HP01893 362 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 MGMTP16455 207 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 NUBP1P53384 320 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 MTCP1P56278 107 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 SOX8P57073 446 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 RPS27AP62979 156 aaKnown RBP13.6□□□□□ -0.23
CLN3-251ENST00000636853 EXOSC2Q13868 293 aaKnown RBP13.6□□□□□ -0.23
CLN3-251ENST00000636853 C2orf68Q2NKX9 166 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 LGALSLQ3ZCW2 172 aaPredicted RBP13.6□□□□□ -0.23
CLN3-251ENST00000636853 C4orf46Q504U0 113 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 MCEMP1Q8IX19 187 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 SPICQ8N5J4 248 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 OR56B1Q8NGI3 324 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 OR13C8Q8NGS7 320 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 MAB21L2Q9Y586 359 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 PTPRBP23467 1997 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 TMEM82A0PJX8 343 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 OR14I1A6ND48 311 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 ZNF503-AS2A6NEH8 195 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 EDN3P14138 238 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 ZNF250P15622 560 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 HRH1P35367 487 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 ALDH3B1P43353 468 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 TNFSF10P50591 281 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 CXADRP78310 365 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 TMEM178AQ8NBL3 297 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 WDYHV1Q96HA8 205 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 S100A13Q99584 98 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 SLC25A21Q9BQT8 299 aaPredicted RBP13.6□□□□□ -0.23
CLN3-251ENST00000636853 GSX2Q9BZM3 304 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 PIPOXQ9P0Z9 390 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 DOCK7Q96N67 2140 aa13.6□□□□□ -0.23
CLN3-251ENST00000636853 FAM186AA6NE01 2351 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 UBE2QL1A1L167 161 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 DHRS7CA6NNS2 312 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 DISC1C4P0D8 188 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 RPL36A-HNRNPH2H7BZ11 118 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms