RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 CEP78Q5JTW2 689 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 PLCXD3Q63HM9 321 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 MOB3CQ70IA8 216 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 RDH10Q8IZV5 341 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 PLPP7Q8NBV4 271 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 OR52N1Q8NH53 320 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 GATAD2BQ8WXI9 593 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 ERGIC1Q969X5 290 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 RNF166Q96A37 237 aaPredicted RBP15.26■□□□□ 0.03
CLN3-243ENST00000635973 C19orf24Q9BVV8 132 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 PPP1R3EQ9H7J1 279 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 TRIM36Q9NQ86 728 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 ERGIC3Q9Y282 383 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 WIPI2Q9Y4P8 454 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 TANC2Q9HCD6 1990 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 TRBV2A0A0J9YWF9 115 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 hCG_1807616A0A1W2PRN6 198 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 A6NIN4 97 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 TMEM212A6NML5 194 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 E9PI62 339 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 CDK1P06493 297 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 TGM4P49221 684 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 MPPED2Q15777 294 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 C1orf87Q8N0U7 546 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 OR5AK2Q8NH90 309 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 CLDND2Q8NHS1 167 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 ITPKCQ96DU7 683 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 RNF170Q96K19 258 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 RASSF4Q9H2L5 321 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 FKBP14Q9NWM8 211 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 DCAF16Q9NXF7 216 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 BLOC1S6Q9UL45 172 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 HHLA2Q9UM44 414 aa15.25■□□□□ 0.03
CLN3-243ENST00000635973 DYSFO75923 2080 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 OR4C45A6NMZ5 311 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 TCF21O43680 179 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 CYB5R3P00387 301 aaPredicted RBP15.24■□□□□ 0.03
CLN3-243ENST00000635973 NRASP01111 189 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 ISG15P05161 165 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 ZNF20P17024 532 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 GTF2A1P52655 376 aaPredicted RBP15.24■□□□□ 0.03
CLN3-243ENST00000635973 SRSF2Q01130 221 aaKnown RBP15.24■□□□□ 0.03
CLN3-243ENST00000635973 CCDC58Q4VC31 144 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 CLVS2Q5SYC1 327 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 OR13C3Q8NGS6 347 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 HPSE2Q8WWQ2 592 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 OR5P3Q8WZ94 311 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 C1orf159Q96HA4 380 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 GAL3ST1Q99999 423 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 LPAR2Q9HBW0 351 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 GPR173Q9NS66 373 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 C1orf123Q9NWV4 160 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 BABAM2Q9NXR7 383 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 METRNQ9UJH8 293 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 NPTNQ9Y639 398 aa15.24■□□□□ 0.03
CLN3-243ENST00000635973 ANKRD61A6NGH8 418 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 TMEM210A6NLX4 147 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 TMEM178BH3BS89 294 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 RGS10O43665 173 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 GATBO75879 557 aaKnown RBP15.23■□□□□ 0.03
CLN3-243ENST00000635973 MSMBP08118 114 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 RPSAP08865 295 aaKnown RBP15.23■□□□□ 0.03
CLN3-243ENST00000635973 EEF1B2P24534 225 aaKnown RBP15.23■□□□□ 0.03
CLN3-243ENST00000635973 RBMXP38159 391 aaKnown RBP15.23■□□□□ 0.03
CLN3-243ENST00000635973 GPM6AP51674 278 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 BTG1P62324 171 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 SCGB2A2Q13296 93 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 CDK5R1Q15078 307 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 ZNF181Q2M3W8 571 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 CEACAM21Q3KPI0 293 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 DMRTC1Q5HYR2 192 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 RBM48Q5RL73 367 aaKnown RBP15.23■□□□□ 0.03
CLN3-243ENST00000635973 RPL22L1Q6P5R6 122 aaKnown RBP15.23■□□□□ 0.03
CLN3-243ENST00000635973 OR1M1Q8NGA1 313 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 OR51F2Q8NH61 342 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 Q8TCH9 128 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 TSEN15Q8WW01 171 aaKnown RBP15.23■□□□□ 0.03
CLN3-243ENST00000635973 TMEM186Q96B77 213 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 PDCD1LG2Q9BQ51 273 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 MND1Q9BWT6 205 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 CCDC90BQ9GZT6 254 aa15.23■□□□□ 0.03
CLN3-243ENST00000635973 OR5B21A6NL26 309 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 ZFPL1O95159 310 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 PTBP3O95758 552 aaKnown RBP15.22■□□□□ 0.03
CLN3-243ENST00000635973 SERPINA3P01011 423 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 CRHBPP24387 322 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 PMELP40967 661 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 WNT4P56705 351 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 TAS2R43P59537 309 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 GNG3P63215 75 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 SLC35A2P78381 396 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 ZNF154Q13106 437 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 XAF1Q6GPH4 301 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 Q6ZSR3 168 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 WDR86Q86TI4 376 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 BOLLQ8N9W6 283 aaKnown RBP15.22■□□□□ 0.03
CLN3-243ENST00000635973 C10orf35Q96D05 121 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 OCEL1Q9H607 264 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 PAK1IP1Q9NWT1 392 aaPredicted RBP15.22■□□□□ 0.03
CLN3-243ENST00000635973 HIF1ANQ9NWT6 349 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms