RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MTORP42345 2549 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 A6NLC8 198 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 TMEM210A6NLX4 147 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 CRHBPP24387 322 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 BTG1P62324 171 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 CDK5R1Q15078 307 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 ZMYND11Q15326 602 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 PLCXD3Q63HM9 321 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 MOB3CQ70IA8 216 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 C1orf87Q8N0U7 546 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 NANOGP1Q8N7R0 232 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 OR5A2Q8NGI9 324 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 OR51A4Q8NGJ6 313 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 OR5AK2Q8NH90 309 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 RPS4Y2Q8TD47 263 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 C10orf35Q96D05 121 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 CDCA4Q9BXL8 241 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 COMMD4Q9H0A8 199 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 TRIM36Q9NQ86 728 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 GPR173Q9NS66 373 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 RNF7Q9UBF6 113 aa13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 SIRT4Q9Y6E7 314 aaPredicted RBP13.91□□□□□ -0.18
CCDC28A-202ENST00000611852 ISPDA4D126 451 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 ANKRD61A6NGH8 418 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 OR5B21A6NL26 309 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 MYL12BO14950 172 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 OGG1O15527 345 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 LY6G6DO95868 133 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 IRF2P14316 349 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 GPM6AP51674 278 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 FAM201AQ5SY85 155 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 CLEC9AQ6UXN8 241 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 KCTD8Q6ZWB6 473 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 LRRC28Q86X40 367 aaPredicted RBP13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 ERVK-18Q9QC07 812 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 ERGIC3Q9Y282 383 aa13.9□□□□□ -0.18
CCDC28A-202ENST00000611852 ZNF732B4DXR9 585 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 CDIPTO14735 213 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF205O95201 554 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 IGHV4-31P0DP07 118 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 WNT4P56705 351 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 LMO4P61968 165 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 GNG3P63215 75 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 HOXA4Q00056 320 aaPredicted RBP13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 DOC2BQ14184 412 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 RBM48Q5RL73 367 aaKnown RBP13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 WDR82Q6UXN9 313 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 SCCPDHQ8NBX0 429 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 FGGYQ96C11 551 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 SMIM19Q96E16 107 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 ADAT3Q96EY9 351 aaPredicted RBP13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 GAL3ST1Q99999 423 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 CHST5Q9GZS9 411 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 ABCA2Q9BZC7 2435 aa13.9□□□□□ -0.19
CCDC28A-202ENST00000611852 hCG_1807616A0A1W2PRN6 198 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 FSTL3O95633 263 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 LHBP01229 141 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 CFHR2P36980 270 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 MDH2P40926 338 aaKnown RBP13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 IRF3Q14653 427 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 UBE2V2Q15819 145 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 TMEM155Q4W5P6 130 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 DMKNQ6E0U4 476 aaPredicted RBP13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 GCSAMQ8N6F7 178 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 OR13C3Q8NGS6 347 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 PP6455Q8WZ26 134 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 RGP1Q92546 391 aaPredicted RBP13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 RPL3LQ92901 407 aaKnown RBP13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 MND1Q9BWT6 205 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 OR51I2Q9H344 312 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 METTL17Q9H7H0 456 aaPredicted RBP13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 TMEM165Q9HC07 324 aa13.89□□□□□ -0.19
CCDC28A-202ENST00000611852 PPIAL4EA0A075B759 164 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 PPIAL4DF5H284 164 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 RGS10O43665 173 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 SERPINA3P01011 423 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 HEXAP06865 529 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 PPIAL4FP0DN26 164 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF20P17024 532 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 GZMKP49863 264 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 TAS2R43P59537 309 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 BLMHQ13867 455 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 ZFP41Q8N8Y5 198 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 LRRC29Q8WV35 223 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 MSI2Q96DH6 328 aaKnown RBP13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 C1orf159Q96HA4 380 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF665Q9H7R5 613 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF696Q9H7X3 374 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 BLOC1S6Q9UL45 172 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 PPIAL4AQ9Y536 164 aa13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.88□□□□□ -0.19
CCDC28A-202ENST00000611852 PQLC2LA1A4F0 135 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 CD5LO43866 347 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 GATBO75879 557 aaKnown RBP13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 IGHV2-5P01817 119 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 MT-ND2P03891 347 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 CYB5R2Q6BCY4 276 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 UTS2BQ765I0 119 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 PRSS48Q7RTY5 328 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 MUC20Q8N307 709 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms