RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 GNB2P62879 340 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 PHEXP78562 749 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 BDH1Q02338 343 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 CRMP1Q14194 572 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 RAB11BQ15907 218 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 ALKBH6Q3KRA9 238 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 GGTA1PQ4G0N0 100 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 DDI2Q5TDH0 399 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 DMKNQ6E0U4 476 aaPredicted RBP3.44□□□□□ -1.86
LINC00540-201ENST00000611481 KCNIP4Q6PIL6 250 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 C6orf89Q6UWU4 347 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 APTXQ7Z2E3 356 aaKnown RBP3.44□□□□□ -1.86
LINC00540-201ENST00000611481 C5orf24Q7Z6I8 188 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 RANBP3LQ86VV4 465 aaPredicted RBP3.44□□□□□ -1.86
LINC00540-201ENST00000611481 C17orf78Q8N4C9 275 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 MAPKAPK5-AS1Q8N8E1 139 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 ACOT4Q8N9L9 421 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 ADAD2Q8NCV1 583 aaKnown RBP3.44□□□□□ -1.86
LINC00540-201ENST00000611481 OR52E4Q8NGH9 312 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 OR51G2Q8NGK0 314 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 CPNE4Q96A23 557 aaPredicted RBP3.44□□□□□ -1.86
LINC00540-201ENST00000611481 APH1AQ96BI3 265 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 LRRC45Q96CN5 670 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 HAUS1Q96CS2 278 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 TXNDC15Q96J42 360 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 BIRC8Q96P09 236 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 F2RL3Q96RI0 385 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 DCTN5Q9BTE1 182 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 C20orf24Q9BUV8 137 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 IL22Q9GZX6 179 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 GFRA4Q9GZZ7 299 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 PPA2Q9H2U2 334 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 ANKRA2Q9H9E1 313 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 CXorf21Q9HAI6 301 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 TREM1Q9NP99 234 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 A4GALTQ9NPC4 353 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 TIGARQ9NQ88 270 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 INPP5EQ9NRR6 644 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 C20orf96Q9NUD7 363 aaPredicted RBP3.44□□□□□ -1.86
LINC00540-201ENST00000611481 NUDT15Q9NV35 164 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 CHMP5Q9NZZ3 219 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 OR5V1Q9UGF6 321 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 ABCG2Q9UNQ0 655 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 IGKV3D-20A0A0C4DH25 116 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 IGHV1-69-2A0A0G2JMI3 117 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 RNASEK-C17orf49H0YIS7 233 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 MLNRO43193 412 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 H6PDO95479 791 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 GPR75O95800 540 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 RBMY1CP0DJD4 496 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 NEFHP12036 1026 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 HPGDP15428 266 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 HIST1H1TP22492 207 aaPredicted RBP3.43□□□□□ -1.86
LINC00540-201ENST00000611481 TUBG1P23258 451 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 ATP5A1P25705 553 aaKnown RBP3.43□□□□□ -1.86
LINC00540-201ENST00000611481 IL12BP29460 328 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 CRYBB2P43320 205 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 ATP12AP54707 1039 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 CCL8P80075 99 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 GTF2H2Q13888 395 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 COTL1Q14019 142 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 TGFBIQ15582 683 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 TRIP13Q15645 432 aaPredicted RBP3.43□□□□□ -1.86
LINC00540-201ENST00000611481 MICBQ29980 383 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 TTLL9Q3SXZ7 439 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 LRRC37A5PQ49AS3 106 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 FGD3Q5JSP0 725 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 DUPD1Q68J44 220 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 CLEC6AQ6EIG7 209 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 GTF2H2CQ6P1K8 395 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 BTNL3Q6UXE8 466 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 UNQ9370/PRO34162Q6UXP9 181 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF562Q6V9R5 426 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 CYHR1Q6ZMK1 362 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 CCDC80Q76M96 950 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 H2BFWTQ7Z2G1 175 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 LINC00518Q8N0U6 118 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 RNF10Q8N5U6 811 aaKnown RBP3.43□□□□□ -1.86
LINC00540-201ENST00000611481 ASCC1Q8N9N2 400 aaKnown RBP3.43□□□□□ -1.86
LINC00540-201ENST00000611481 OR7G2Q8NG99 324 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 OR7G1Q8NGA0 311 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 OR7A2PQ8NGA2 310 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 OR8K1Q8NGG5 319 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 OR1J1Q8NGS3 322 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 ANKRD7Q92527 254 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 TANKQ92844 425 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 LHX4Q969G2 390 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 C10orf35Q96D05 121 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 PELI1Q96FA3 418 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 ITCHQ96J02 903 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 RNF145Q96MT1 663 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 QKIQ96PU8 341 aaKnown RBP eCLIP3.43□□□□□ -1.868e-7■■■□□ 15.7
LINC00540-201ENST00000611481 SYT11Q9BT88 431 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 ST6GALNAC5Q9BVH7 336 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 RHOJQ9H4E5 214 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 PELI2Q9HAT8 420 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 S100A14Q9HCY8 104 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 SCRT2Q9NQ03 307 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 POLE4Q9NR33 117 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms