RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TSPAN31Q12999 210 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 SNAI3Q3KNW1 292 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 LCN1P1Q5VSP4 162 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 HACD2Q6Y1H2 254 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 SHFQ7M4L6 423 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 CALHM1Q8IU99 346 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.13□□□□□ -1.59
CUX1-220ENST00000607092 SLC15A3Q8IY34 581 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 LNX2Q8N448 690 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 FAM216BQ8N7L0 139 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 Q8N7P7 452 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 WFDC9Q8NEX5 89 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 GNPDA2Q8TDQ7 276 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 CAPSLQ8WWF8 208 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 DUS3LQ96G46 650 aaKnown RBP5.13□□□□□ -1.59
CUX1-220ENST00000607092 REEP6Q96HR9 211 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 RCC1LQ96I51 464 aaKnown RBP5.13□□□□□ -1.59
CUX1-220ENST00000607092 MAP6Q96JE9 813 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 NIPAL2Q9H841 368 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 IL1RAPQ9NPH3 570 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 CENPMQ9NSP4 180 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 AURKAIP1Q9NWT8 199 aaPredicted RBP5.13□□□□□ -1.59
CUX1-220ENST00000607092 MRPL22Q9NWU5 206 aaKnown RBP5.13□□□□□ -1.59
CUX1-220ENST00000607092 NDE1Q9NXR1 346 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 NDUFAF4Q9P032 175 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 NLKQ9UBE8 527 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.13□□□□□ -1.596e-10■■□□□ 13.5
CUX1-220ENST00000607092 TBL2Q9Y4P3 447 aaKnown RBP5.13□□□□□ -1.59
CUX1-220ENST00000607092 CDH10Q9Y6N8 788 aa5.13□□□□□ -1.59
CUX1-220ENST00000607092 IGHV3OR15-7A0A075B7D8 119 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 hCG_38984A0A1B0GV85 526 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 MEGF11A6BM72 1044 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 OR6C68A6NDL8 312 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 OR5B21A6NL26 309 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 OR2AT4A6NND4 320 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 BPNT1O95861 308 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 CST4P01036 141 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 RBP4P02753 201 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 ATP6V1B1P15313 513 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 GLRA1P23415 457 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 AZGP1P25311 298 aaKnown RBP5.12□□□□□ -1.59
CUX1-220ENST00000607092 RBMXP38159 391 aaKnown RBP5.12□□□□□ -1.59
CUX1-220ENST00000607092 GSSP48637 474 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 GSK3AP49840 483 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 CAPZA1P52907 286 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 SLC25A1P53007 311 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 FXYD6P3P58550 94 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 FAM3AP98173 230 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 IL18R1Q13478 541 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 CNN3Q15417 329 aaKnown RBP5.12□□□□□ -1.59
CUX1-220ENST00000607092 LY6EQ16553 131 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 SMIM21Q3B7S5 101 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 NSUN5P1Q3KNT7 163 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 FAM76BQ5HYJ3 339 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 SAMD4BQ5PRF9 694 aaKnown RBP5.12□□□□□ -1.59
CUX1-220ENST00000607092 OTPQ5XKR4 325 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 KCTD8Q6ZWB6 473 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 C16orf82Q7Z2V1 217 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 NAA40Q86UY6 237 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 C11orf53Q8IXP5 236 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 TIGD4Q8IY51 512 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 FAM185AQ8N0U4 392 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 Q8N2B8 174 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 SDR9C7Q8NEX9 313 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 TMEM185AQ8NFB2 350 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 OR13D1Q8NGV5 346 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 OR52J3Q8NH60 311 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 ANGPTL6Q8NI99 470 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 PHF21AQ96BD5 680 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 RCN3Q96D15 328 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 MALSU1Q96EH3 234 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 SDSLQ96GA7 329 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 PGAM5Q96HS1 289 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 C7orf34Q96L11 122 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 CADM1Q9BY67 442 aaKnown RBP5.12□□□□□ -1.59
CUX1-220ENST00000607092 SEMA6AQ9H2E6 1030 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 DCLRE1BQ9H816 532 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 GORASP2Q9H8Y8 452 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 SPAG4Q9NPE6 437 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 DCAF13Q9NV06 445 aaKnown RBP5.12□□□□□ -1.59
CUX1-220ENST00000607092 CMTM6Q9NX76 183 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 USE1Q9NZ43 259 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 N6AMT1Q9Y5N5 214 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 COMMD3-BMI1R4GMX3 469 aa5.12□□□□□ -1.59
CUX1-220ENST00000607092 A0A1W2PRD5 423 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 A0A1W2PRF3 423 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 A0A1W2PRM7 423 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 ACOD1A6NK06 481 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 RIIAD1A6NNX1 92 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.11□□□□□ -1.59
CUX1-220ENST00000607092 ZNF593O00488 134 aaPredicted RBP5.11□□□□□ -1.59
CUX1-220ENST00000607092 E2F6O75461 281 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 ATP6V1G2O95670 118 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 FABP3P05413 133 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 H2BFMP0C1H6 154 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 NHLRC4P0CG21 123 aaPredicted RBP5.11□□□□□ -1.59
CUX1-220ENST00000607092 COX4I1P13073 169 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 ZNF3P17036 446 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 SLC6A1P30531 599 aa5.11□□□□□ -1.59
CUX1-220ENST00000607092 MAP2K3P46734 347 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms