RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	C19orf24	Q9BVV8	132 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	TPK1	Q9H3S4	243 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	CHODL	Q9H9P2	273 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	PLEKHA1	Q9HB21	404 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	ZNF275	Q9NSD4	429 aa	Predicted RBP	10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	STARD10	Q9Y365	291 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012		V9GYS6	101 aa		10.81	□□□□□ -0.68
UPF1-208	ENST00000600012	TRAV1-2	A0A0B4J238	106 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	IGHV2OR16-5	A0A0B4J2B6	119 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	DHRS3	O75911	302 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	CRYAA	P02489	173 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	MAS1	P04201	325 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	FAH	P16930	419 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	FST	P19883	344 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	ACKR3	P25106	362 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	SERPINF1	P36955	418 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	GNAL	P38405	381 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	OR10A3	P58181	314 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	ERVS71-1	P61550	626 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	FAM3A	P98173	230 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	MALL	Q13021	153 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	HLX	Q14774	488 aa	Predicted RBP	10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	CARTPT	Q16568	116 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	FAM120AOS	Q5T036	256 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	SPATA46	Q5T0L3	261 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	MRPL21	Q7Z2W9	205 aa	Known RBP	10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	LRRTM1	Q86UE6	522 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	NR2C2AP	Q86WQ0	139 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	THRSP	Q92748	146 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	MSI2	Q96DH6	328 aa	Known RBP	10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	VRK1	Q99986	396 aa	Predicted RBP	10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	BARHL1	Q9BZE3	327 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	RGCC	Q9H4X1	137 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	MOV10	Q9HCE1	1003 aa	Known RBP	10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	TCF7L1	Q9HCS4	588 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	CA10	Q9NS85	328 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	TBCCD1	Q9NVR7	557 aa		10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	CCDC59	Q9P031	241 aa	Known RBP	10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	AK6	Q9Y3D8	172 aa	Known RBP	10.8	□□□□□ -0.68
UPF1-208	ENST00000600012	IGHV4-61	A0A0C4DH41	118 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012		A0A0G2JK05	382 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012		B9A039	149 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	HAX1	O00165	279 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	ZNF35	P13682	527 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	ZNF12	P17014	697 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	IGFBP3	P17936	291 aa	Predicted RBP	10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	ADRA2C	P18825	462 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	SRM	P19623	302 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	RAB3B	P20337	219 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	GSK3A	P49840	483 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	NAAA	Q02083	359 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	GK2	Q14410	553 aa	Predicted RBP	10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	EFNB3	Q15768	340 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	DGUOK	Q16854	277 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	C3orf36	Q3SXR2	165 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	CEP78	Q5JTW2	689 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012		Q6ZSR3	168 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	IL17REL	Q6ZVW7	336 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	DNAAF1	Q8NEP3	725 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	OR51A2	Q8NGJ7	313 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	OR1J1	Q8NGS3	322 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	OR13C9	Q8NGT0	318 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	SPSB4	Q96A44	273 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	SLC25A46	Q96AG3	418 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	GFI1	Q99684	422 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	SLC30A2	Q9BRI3	323 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	SLIRP	Q9GZT3	109 aa	Known RBP	10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	SLITRK2	Q9H156	845 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	EIF3K	Q9UBQ5	218 aa	Known RBP	10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	ZNF391	Q9UJN7	358 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	FBXO9	Q9UK97	447 aa	Predicted RBP	10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	PIGL	Q9Y2B2	252 aa		10.79	□□□□□ -0.68
UPF1-208	ENST00000600012	PDCD5	O14737	125 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	ICMT	O60725	284 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	MTRF1	O75570	445 aa	Known RBP	10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	THBS4	P35443	961 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	PPOX	P50336	477 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	UCP2	P55851	309 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	PPP1CB	P62140	327 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	OR8B8	Q15620	311 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	ADIPOQ	Q15848	244 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	TPRA1	Q86W33	373 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	PARP16	Q8N5Y8	322 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	CCDC54	Q8NEL0	328 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	SEMA6D	Q8NFY4	1073 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	OR56B2P	Q8NGI1	322 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	SLC25A40	Q8TBP6	338 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	NKX3-1	Q99801	234 aa	Predicted RBP	10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	BPESC1	Q9GZL8	116 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	RAB1B	Q9H0U4	201 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	PLK3	Q9H4B4	646 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	ZCCHC4	Q9H5U6	513 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	CKLF	Q9UBR5	152 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	FOXJ3	Q9UPW0	622 aa		10.78	□□□□□ -0.68
UPF1-208	ENST00000600012	GGT3P	A6NGU5	568 aa		10.77	□□□□□ -0.69
UPF1-208	ENST00000600012	ANXA2P2	A6NMY6	339 aa		10.77	□□□□□ -0.69
UPF1-208	ENST00000600012		J3QW42	95 aa		10.77	□□□□□ -0.69
UPF1-208	ENST00000600012	TGFA	P01135	160 aa		10.77	□□□□□ -0.69
UPF1-208	ENST00000600012	OR4A8	P0C604	315 aa		10.77	□□□□□ -0.69
UPF1-208	ENST00000600012	SLC2A2	P11168	524 aa	Predicted RBP	10.77	□□□□□ -0.69

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