RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ZNF816-ZNF321PA0A0X1KG74 233 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 A0A1W2PPH5 198 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 OR5B21A6NL26 309 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 FAM183AA6NL82 134 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 ZNF850A8MQ14 1090 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 RNASEK-C17orf49H0YIS7 233 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 NPFFO15130 113 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 ZNF254O75437 659 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 E2F6O75461 281 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 PAHP00439 452 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 OSMP13725 252 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 ANXA8P13928 327 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 AMY2BP19961 511 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 GNG3P63215 75 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 CDK5Q00535 292 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 GFOD2Q3B7J2 385 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 CEACAM21Q3KPI0 293 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 ASPHD2Q6ICH7 369 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 Q6ZSV7 163 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 Q8N7P7 452 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 BEND2Q8NDZ0 799 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 OR5A2Q8NGI9 324 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 THEM6Q8WUY1 208 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 CANT1Q8WVQ1 401 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 TAF15Q92804 592 aaKnown RBP eCLIP11.17□□□□□ -0.62
TRIM28-211ENST00000597968 UBE2FQ969M7 185 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 RNF170Q96K19 258 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 AMELYQ99218 206 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 RBM4BQ9BQ04 359 aaKnown RBP11.17□□□□□ -0.62
TRIM28-211ENST00000597968 YIPF3Q9GZM5 350 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 OR51V1Q9H2C8 321 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 NLKQ9UBE8 527 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 FBLN5Q9UBX5 448 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 SF3B6Q9Y3B4 125 aaKnown RBP11.17□□□□□ -0.62
TRIM28-211ENST00000597968 TMEM14AQ9Y6G1 99 aa11.17□□□□□ -0.62
TRIM28-211ENST00000597968 A0A0G2JK05 382 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 SLC22A31A6NKX4 558 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 OR2AT4A6NND4 320 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 ALOX5APP20292 161 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 GLRA1P23415 457 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 ACKR3P25106 362 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 POU4F2Q12837 409 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 IKZF1Q13422 519 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 GINS1Q14691 196 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 C2orf68Q2NKX9 166 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 PLBD1Q6P4A8 553 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 HS3ST5Q8IZT8 346 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 PIGCQ92535 297 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 OTULINQ96BN8 352 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 GAFA1Q96PS6 74 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 MROQ9BYG7 248 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 TCF7L1Q9HCS4 588 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 RAB18Q9NP72 206 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 SIRT7Q9NRC8 400 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 LAMP5Q9UJQ1 280 aa11.16□□□□□ -0.62
TRIM28-211ENST00000597968 VWFP04275 2813 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 hCG_1809904A0A1W2PP81 198 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 A0A1W2PPE2 198 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 A0A1W2PR64 198 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 A0A1W2PRV1 198 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 DYNC1I1O14576 645 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 GNGT2O14610 69 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 MTRF1O75570 445 aaKnown RBP11.15□□□□□ -0.62
TRIM28-211ENST00000597968 PRKACGP22612 351 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 POU1F1P28069 291 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 ROM1Q03395 351 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 RIPPLY1Q0D2K3 151 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 DGUOKQ16854 277 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 LIAT1Q6ZQX7 453 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 KCTD8Q6ZWB6 473 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 KRT77Q7Z794 578 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 OR8B12Q8NGG6 310 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 FAM81AQ8TBF8 368 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 HPSE2Q8WWQ2 592 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 ASB17Q8WXJ9 295 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 H1FXQ92522 213 aaKnown RBP11.15□□□□□ -0.62
TRIM28-211ENST00000597968 RPL3LQ92901 407 aaKnown RBP11.15□□□□□ -0.62
TRIM28-211ENST00000597968 NRBF2Q96F24 287 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 SDSLQ96GA7 329 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 MNTQ99583 582 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 MEGF9Q9H1U4 602 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 WDR13Q9H1Z4 485 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 OR51I2Q9H344 312 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 RANBP3Q9H6Z4 567 aaPredicted RBP11.15□□□□□ -0.62
TRIM28-211ENST00000597968 BRD7Q9NPI1 651 aa11.15□□□□□ -0.62
TRIM28-211ENST00000597968 TMEM269A0A1B0GVZ9 245 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 A0A1B0GW55 424 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 A0A1W2PQ09 198 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 MEIOCA2RUB1 952 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 DHRS7CA6NNS2 312 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 GSC2O15499 205 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 AKR7A2O43488 359 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 SELENOFO60613 162 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 NOS1APO75052 506 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-211ENST00000597968 IGLV3-1P01715 115 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 DUX4L2P0CJ85 424 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 DUX4L3P0CJ86 424 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 DUX4L4P0CJ87 422 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 DUX4L5P0CJ88 424 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 DUX4L6P0CJ89 424 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms