RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 RHBDD3Q9Y3P4 386 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 ZNF816-ZNF321PA0A0X1KG74 233 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 IQCF6A8MYZ5 107 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 SPRY3O43610 288 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 NCR1O76036 304 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 HPXP02790 462 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 TGFBR1P36897 503 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 GNALP38405 381 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 NCS1P62166 190 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 CCL8P80075 99 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 HNRNPA0Q13151 305 aaKnown RBP12.73□□□□□ -0.37
TRIM28-207ENST00000597136 HSD17B12Q53GQ0 312 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 TMEM42Q69YG0 159 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 ASPHD2Q6ICH7 369 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 KRT74Q7RTS7 529 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 BHLHE23Q8NDY6 225 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 OR5D14Q8NGL3 314 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 PP6455Q8WZ26 134 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 DGCR14Q96DF8 476 aaKnown RBP12.73□□□□□ -0.37
TRIM28-207ENST00000597136 Q96MF0 132 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.73□□□□□ -0.378e-11■■■■■ 34.2
TRIM28-207ENST00000597136 TRAV8-7A0A075B6U6 113 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 H0YL77 283 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 H3BMQ9 156 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 ZNF701M0R085 212 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-207ENST00000597136 NOL3O60936 208 aaKnown RBP12.73□□□□□ -0.37
TRIM28-207ENST00000597136 CST4P01036 141 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 IGHV1-46P01743 117 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 SRMP19623 302 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 FSTP19883 344 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 COL8A2P25067 703 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 ZNF81P51508 661 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 CLVS2Q5SYC1 327 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 SHEQ5VZ18 495 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 PRSS57Q6UWY2 283 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 SPNS3Q6ZMD2 512 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 DNM1P46Q6ZS02 220 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 CHST5Q9GZS9 411 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 TAS2R4Q9NYW5 299 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 MRPL15Q9P015 296 aaKnown RBP12.73□□□□□ -0.37
TRIM28-207ENST00000597136 CKLFQ9UBR5 152 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 RSL24D1Q9UHA3 163 aaKnown RBP12.73□□□□□ -0.37
TRIM28-207ENST00000597136 FOXJ3Q9UPW0 622 aa12.73□□□□□ -0.37
TRIM28-207ENST00000597136 MTORP42345 2549 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 TRAV1-2A0A0B4J238 106 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 PLSCR5A0PG75 271 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 SHISA3A0PJX4 238 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 TRIM64BA6NI03 449 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 GMDSO60547 372 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 IGFBP3P17936 291 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-207ENST00000597136 MOGQ16653 247 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 CLEC12BQ2HXU8 276 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 ZNF529Q6P280 563 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 UTS2BQ765I0 119 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 TGIF2LYQ8IUE0 185 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 FTMTQ8N4E7 242 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 OR8G5Q8NG78 346 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 UBASH3BQ8TF42 649 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 PIGCQ92535 297 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 C12orf43Q96C57 262 aaKnown RBP12.72□□□□□ -0.37
TRIM28-207ENST00000597136 PAPOLGQ9BWT3 736 aaKnown RBP12.72□□□□□ -0.37
TRIM28-207ENST00000597136 FAM192AQ9GZU8 254 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 ZCCHC4Q9H5U6 513 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 PPP1R3EQ9H7J1 279 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 SNTG1Q9NSN8 517 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 GPR160Q9UJ42 338 aa12.72□□□□□ -0.37
TRIM28-207ENST00000597136 ANKRD30BLA7E2S9 258 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 SLC22A1O15245 554 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 NRASP01111 189 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 MYL9P24844 172 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 SDC2P34741 201 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 MTNR1BP49286 362 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 UBE2V2Q15819 145 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 CIARTQ8N365 385 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-207ENST00000597136 NDNFQ8TB73 568 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 NEU4Q8WWR8 484 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-207ENST00000597136 TCF7L1Q9HCS4 588 aa12.71□□□□□ -0.37
TRIM28-207ENST00000597136 FBXO9Q9UK97 447 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-207ENST00000597136 IGKV1-9A0A0C4DH69 117 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 ZNF850A8MQ14 1090 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 MLNRO43193 412 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 ALX3O95076 343 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 DAOP14920 347 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 CA6P23280 308 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 PPP3R1P63098 170 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 PRDX4Q13162 271 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 SPCS2Q15005 226 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 DMRTC1Q5HYR2 192 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 LRRTM1Q86UE6 522 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 OR2Z1Q8NG97 314 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 OR1M1Q8NGA1 313 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 OR51A2Q8NGJ7 313 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 OR13C9Q8NGT0 318 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 YIPF5Q969M3 257 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 SLC30A2Q9BRI3 323 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 SLITRK2Q9H156 845 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 BARX1Q9HBU1 254 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-207ENST00000597136 GPR173Q9NS66 373 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 TREM2Q9NZC2 230 aa12.7□□□□□ -0.38
TRIM28-207ENST00000597136 IGHV4-30-2A0A087WSY4 118 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms