RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 LRP11Q86VZ4 500 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 PIAS4Q8N2W9 510 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 ACBD4Q8NC06 268 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 BHLHE23Q8NDY6 225 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 OR5A2Q8NGI9 324 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 SYNPRQ8TBG9 265 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 FAM3DQ96BQ1 224 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 C1orf147Q96MC9 270 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 TMEM204Q9BSN7 226 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 FZR1Q9UM11 496 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 SLC7A11Q9UPY5 501 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 ETV7Q9Y603 341 aa12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 HRNRQ86YZ3 2850 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-211ENST00000595945 HPGDSO60760 199 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 BPNT1O95861 308 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 CD3EP07766 207 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 RNF224P0DH78 156 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 BMP4P12644 408 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 CA6P23280 308 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 TNFSF8P32971 234 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 OR3A4PP47883 348 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 ATP1B3P54709 279 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 KLF3P57682 345 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 QRFPP83859 136 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 SRSF1Q07955 248 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 SLC22A25Q6T423 547 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 ASCL4Q6XD76 172 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 Q6ZR03 302 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 LAX1Q8IWV1 398 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 OR51D1Q8NGF3 324 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 ZNF671Q8TAW3 534 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 DVL3Q92997 716 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 MRPL24Q96A35 216 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 SLC25A38Q96DW6 304 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 BORCS8Q96FH0 119 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 MRPL37Q9BZE1 423 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 CA10Q9NS85 328 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 FBLN5Q9UBX5 448 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 NOP16Q9Y3C1 178 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 ATP23Q9Y6H3 246 aa12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 HELZ2Q9BYK8 2649 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-211ENST00000595945 LOC100289279A0A1B0GTE1 492 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 TMEM272A0A1B0GTI8 110 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 FAM230AA0A1W2PPH8 454 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 OR5B21A6NL26 309 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 TIMM8AO60220 97 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 OCMP0CE72 109 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 S100A5P33763 92 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 PTGFRP43088 359 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 POU3F4P49335 361 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 EVX1P49640 407 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 RBP2P50120 134 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 CAPZA1P52907 286 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 MTCP1P56278 107 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 C2orf76Q3KRA6 126 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 ADAM5Q6NVV9 412 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 ANGPTL5Q86XS5 388 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 SAMD12Q8N8I0 201 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 FAM222BQ8WU58 562 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 RFT1Q96AA3 541 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 CPNE2Q96FN4 548 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 SOSTQ9BQB4 213 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 SLC22A4Q9H015 551 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 ABCG5Q9H222 651 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 TMEM100Q9NV29 134 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 MYEF2Q9P2K5 600 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 RALYQ9UKM9 306 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 MRPS28Q9Y2Q9 187 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 RNF115Q9Y4L5 304 aa12.57□□□□□ -0.4
SHKBP1-211ENST00000595945 TMEM14DPA8MWL7 114 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 E7EQL1 145 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 H0YL77 283 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 PYCARD-AS1I3L0S3 204 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 RGS5O15539 181 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 MLNRO43193 412 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 APOA1P02647 267 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 EIF4EP06730 217 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 UBBP0CG47 229 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 VSIG8P0DPA2 414 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 ELK1P19419 428 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 RANBP1P43487 201 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 KIR2DL3P43628 341 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 PLA2G7Q13093 441 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 ADIPOQQ15848 244 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 FAM76BQ5HYJ3 339 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 UBE2NLQ5JXB2 153 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 VHLLQ6RSH7 139 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 GLIPR1L1Q6UWM5 242 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 C1QL2Q7Z5L3 287 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 PNLDC1Q8NA58 520 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 LILRB1Q8NHL6 650 aaPredicted RBP12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 S100ZQ8WXG8 99 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 PTX4Q96A99 478 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 RNF170Q96K19 258 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 HS3ST6Q96QI5 342 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 HIST1H2AAQ96QV6 131 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 GPER1Q99527 375 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 SYT3Q9BQG1 590 aa12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 ADAT1Q9BUB4 502 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-211ENST00000595945 KCNK15Q9H427 330 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms