RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 CD200P41217 278 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 ISL1P61371 349 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 ACTA2P62736 377 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 ACTG2P63267 376 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 MAB21L1Q13394 359 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 RIPK1Q13546 671 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 CDONQ4KMG0 1287 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 BCL2L15Q5TBC7 163 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 PRAMEF6Q5VXH4 476 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 BTNL3Q6UXE8 466 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 BRD3OSQ6XYD6 125 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 ELMOD2Q8IZ81 293 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 C8orf59Q8N0T1 100 aaPredicted RBP10.4□□□□□ -0.74
UPF1-203ENST00000594504 SPERTQ8NA61 448 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 CNIH3Q8TBE1 160 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 DACT3Q96B18 629 aaPredicted RBP10.4□□□□□ -0.74
UPF1-203ENST00000594504 NEIL1Q96FI4 390 aaPredicted RBP10.4□□□□□ -0.74
UPF1-203ENST00000594504 ZNF696Q9H7X3 374 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 INPP5EQ9NRR6 644 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 UFSP2Q9NUQ7 469 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 MIOXQ9UGB7 285 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 GNG8Q9UK08 70 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 OR52A1Q9UKL2 312 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 GTF2A1LQ9UNN4 478 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 SNX5Q9Y5X3 404 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 DOCK11Q5JSL3 2073 aa10.4□□□□□ -0.75
UPF1-203ENST00000594504 KIR2DS1A0A191URI9 304 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 RPP14O95059 124 aaKnown RBP10.39□□□□□ -0.75
UPF1-203ENST00000594504 PLATP00750 562 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 IGLV3-1P01715 115 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 IGHA1P01876 353 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 TTRP02766 147 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 GNAO1P09471 354 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 ACKR3P25106 362 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 GNALP38405 381 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 GATA4P43694 442 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 MAP2K3P46734 347 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 SRSF4Q08170 494 aaKnown RBP10.39□□□□□ -0.75
UPF1-203ENST00000594504 MZT1Q08AG7 82 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 GALEQ14376 348 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 MPPED2Q15777 294 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 SMN1Q16637 294 aaKnown RBP10.39□□□□□ -0.75
UPF1-203ENST00000594504 DEFB112Q30KQ8 113 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 ZNF404Q494X3 552 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 TP53I3Q53FA7 332 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 COMMD2Q86X83 199 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 EGFL6Q8IUX8 553 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 OR51E1Q8TCB6 317 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 RORBQ92753 470 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 TFAP2CQ92754 450 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 ERGIC1Q969X5 290 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 SLC25A28Q96A46 364 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 UPRTQ96BW1 309 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 NUDT16L1Q9BRJ7 211 aaKnown RBP10.39□□□□□ -0.75
UPF1-203ENST00000594504 PAPOLGQ9BWT3 736 aaKnown RBP10.39□□□□□ -0.75
UPF1-203ENST00000594504 ABCB9Q9NP78 766 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 GPR84Q9NQS5 396 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 ACOXLQ9NUZ1 547 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 MYRFQ9Y2G1 1151 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 RHBDD3Q9Y3P4 386 aa10.39□□□□□ -0.75
UPF1-203ENST00000594504 IRGMA1A4Y4 181 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 HOXA3O43365 443 aaPredicted RBP10.38□□□□□ -0.75
UPF1-203ENST00000594504 FAM20BO75063 409 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 MTRF1O75570 445 aaKnown RBP10.38□□□□□ -0.75
UPF1-203ENST00000594504 ATP6V1G2O95670 118 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 PTBP3O95758 552 aaKnown RBP10.38□□□□□ -0.75
UPF1-203ENST00000594504 CST4P01036 141 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 PITPNBP48739 271 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 AQP4P55087 323 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 FGF12P61328 243 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 ZNF181Q2M3W8 571 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 RUSC1-AS1Q66K80 236 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 SFRP4Q6FHJ7 346 aaPredicted RBP10.38□□□□□ -0.75
UPF1-203ENST00000594504 C16orf87Q6PH81 154 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 ZNF841Q6ZN19 808 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 KRT74Q7RTS7 529 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 CATSPERDQ86XM0 798 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 BOLLQ8N9W6 283 aaKnown RBP10.38□□□□□ -0.75
UPF1-203ENST00000594504 PLPP7Q8NBV4 271 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 OR8B3Q8NGG8 313 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 OR52I1Q8NGK6 324 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 OR8S1Q8NH09 359 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 PPP1R14AQ96A00 147 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 TMIGD2Q96BF3 282 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 FAM71F1Q96KD3 344 aaPredicted RBP10.38□□□□□ -0.75
UPF1-203ENST00000594504 OR8B2Q96RD0 313 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 ALG8Q9BVK2 526 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 JAM3Q9BX67 310 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 RASSF4Q9H2L5 321 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 ZMAT3Q9HA38 289 aaKnown RBP10.38□□□□□ -0.75
UPF1-203ENST00000594504 FGF20Q9NP95 211 aaPredicted RBP10.38□□□□□ -0.75
UPF1-203ENST00000594504 C14orf119Q9NWQ9 140 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 MPC1Q9Y5U8 109 aa10.38□□□□□ -0.75
UPF1-203ENST00000594504 ZNF816-ZNF321PA0A0X1KG74 233 aa10.37□□□□□ -0.75
UPF1-203ENST00000594504 LRRC30A6NM36 301 aa10.37□□□□□ -0.75
UPF1-203ENST00000594504 ANXA2P2A6NMY6 339 aa10.37□□□□□ -0.75
UPF1-203ENST00000594504 C22orf46C9J442 243 aa10.37□□□□□ -0.75
UPF1-203ENST00000594504 CLDN34H7C241 214 aa10.37□□□□□ -0.75
UPF1-203ENST00000594504 DHRS3O75911 302 aa10.37□□□□□ -0.75
UPF1-203ENST00000594504 DCKP27707 260 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms