RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PRR14LQ5THK1 2151 aa2.47□□□□□ -2.01
SS18-214ENST00000580003 A0A0G2JMP0 313 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 A0A0X1KG70 313 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 TMEM72A0PK05 275 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 CCDC169A6NNP5 214 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 AQP9O43315 295 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 XRCC2O43543 280 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 OXTP01178 125 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 THRAP10827 490 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 RGS6P49758 472 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 KLF3P57682 345 aaPredicted RBP2.46□□□□□ -2.02
SS18-214ENST00000580003 INCA1Q0VD86 236 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 KLHL40Q2TBA0 621 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 STEAP4Q687X5 459 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 TMEM53Q6P2H8 277 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 BBS5Q8N3I7 341 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 RXFP2Q8WXD0 754 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 SCGB3A2Q96PL1 93 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 KLF6Q99612 283 aaPredicted RBP2.46□□□□□ -2.02
SS18-214ENST00000580003 VSIRQ9H7M9 311 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 FANCEQ9HB96 536 aa2.46□□□□□ -2.02
SS18-214ENST00000580003 MYEF2Q9P2K5 600 aaKnown RBP2.46□□□□□ -2.02
SS18-214ENST00000580003 J3QKU1 62 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 OR5AC1P0C628 307 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 ATP5G2Q06055 141 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 FMODQ06828 376 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 TRDNQ13061 729 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 LDLRAD2Q5SZI1 272 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 MRPL2Q5T653 305 aaKnown RBP2.45□□□□□ -2.02
SS18-214ENST00000580003 FA2HQ7L5A8 372 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 PQLC3Q8N755 202 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 OR4D6Q8NGJ1 314 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 ITFG1Q8TB96 612 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 RBPMSQ93062 196 aaKnown RBP2.45□□□□□ -2.02
SS18-214ENST00000580003 OTUB2Q96DC9 234 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 API5Q9BZZ5 524 aaKnown RBP2.45□□□□□ -2.02
SS18-214ENST00000580003 DSN1Q9H410 356 aa2.45□□□□□ -2.02
SS18-214ENST00000580003 NLE1Q9NVX2 485 aaPredicted RBP2.45□□□□□ -2.02
SS18-214ENST00000580003 NDRG2Q9UN36 371 aaKnown RBP2.45□□□□□ -2.02
SS18-214ENST00000580003 CTAGE15A4D2H0 777 aa2.44□□□□□ -2.02
SS18-214ENST00000580003 TEX46H3BTG2 121 aa2.44□□□□□ -2.02
SS18-214ENST00000580003 CPSF4O95639 269 aaKnown RBP2.44□□□□□ -2.02
SS18-214ENST00000580003 BEX5Q5H9J7 111 aa2.44□□□□□ -2.02
SS18-214ENST00000580003 LIN9Q5TKA1 542 aa2.44□□□□□ -2.02
SS18-214ENST00000580003 TRMT10CQ7L0Y3 403 aaKnown RBP2.44□□□□□ -2.02
SS18-214ENST00000580003 CTAGE6Q86UF2 777 aa2.44□□□□□ -2.02
SS18-214ENST00000580003 APRG1Q8IVJ8 170 aa2.44□□□□□ -2.02
SS18-214ENST00000580003 LOXHD1Q8IVV2 1947 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 IGLV10-54A0A075B6I4 117 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 IGHV6-1A0A0B4J1U7 121 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 A0A1W2PRD5 423 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 UPK1BO75841 260 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 GFAPP14136 432 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 GSTM3P21266 225 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 ADIGQ0VDE8 80 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 OR8K3Q8NH51 312 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 FAM19A4Q96LR4 140 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 CSPG4P5Q96PW8 444 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 NAPGQ99747 312 aaPredicted RBP2.43□□□□□ -2.02
SS18-214ENST00000580003 REEP1Q9H902 201 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 FBXO8Q9NRD0 319 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 RAB20Q9NX57 234 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 INSRP06213 1382 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 JCADQ9P266 1359 aa2.43□□□□□ -2.02
SS18-214ENST00000580003 LINC01619G3V211 115 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 C3orf84H3BNL1 204 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 SYNGR2O43760 224 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 FARS2O95363 451 aaKnown RBP2.42□□□□□ -2.02
SS18-214ENST00000580003 UBCP0CG48 685 aaKnown RBP2.42□□□□□ -2.02
SS18-214ENST00000580003 CALRP27797 417 aaKnown RBP2.42□□□□□ -2.02
SS18-214ENST00000580003 GRB2P62993 217 aaKnown RBP2.42□□□□□ -2.02
SS18-214ENST00000580003 ITIH4Q14624 930 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 PDZD11Q5EBL8 140 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 C9orf72Q96LT7 481 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 DERL3Q96Q80 235 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 PEBP4Q96S96 227 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 TMEM175Q9BSA9 504 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 AGMATQ9BSE5 352 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 ELOVL6Q9H5J4 265 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 SSH2Q76I76 1423 aa2.42□□□□□ -2.02
SS18-214ENST00000580003 MPDU1O75352 247 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 RAD51Q06609 339 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 TMPPEQ6ZT21 453 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 C8orf31Q8N9H6 132 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 MUC7Q8TAX7 377 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 APH1AQ96BI3 265 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 SMARCD1Q96GM5 515 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 OPALINQ96PE5 141 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 C11orf70Q9BRQ4 267 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 FAM60AQ9NP50 221 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 ENPP4Q9Y6X5 453 aa2.41□□□□□ -2.02
SS18-214ENST00000580003 SDHAF1A6NFY7 115 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 CD99P14209 185 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 IL5RAQ01344 420 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 GABRA6Q16445 453 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 RPEL1Q2QD12 228 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 NDUFAF7Q7L592 441 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 ZFP62Q8NB50 900 aaPredicted RBP2.4□□□□□ -2.03
SS18-214ENST00000580003 CCDC148Q8NFR7 591 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 Q96MT0 163 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms