RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PPP1R1CQ8WVI7 109 aa8.82□□□□□ -1
VPS53-220ENST00000576149 HAS2Q92819 552 aa8.82□□□□□ -1
VPS53-220ENST00000576149 SGK3Q96BR1 496 aa8.82□□□□□ -1
VPS53-220ENST00000576149 CXorf58Q96LI9 332 aa8.82□□□□□ -1
VPS53-220ENST00000576149 SMOC1Q9H4F8 434 aa8.82□□□□□ -1
VPS53-220ENST00000576149 NARFLQ9H6Q4 476 aa8.82□□□□□ -1
VPS53-220ENST00000576149 TNFSF18Q9UNG2 199 aa8.82□□□□□ -1
VPS53-220ENST00000576149 GPR132Q9UNW8 380 aa8.82□□□□□ -1
VPS53-220ENST00000576149 CFAP54Q96N23 3096 aa8.82□□□□□ -1
VPS53-220ENST00000576149 MFSD2BA6NFX1 497 aa8.82□□□□□ -1
VPS53-220ENST00000576149 LRRC3CA6NJW4 275 aa8.82□□□□□ -1
VPS53-220ENST00000576149 DBX1A6NMT0 343 aa8.82□□□□□ -1
VPS53-220ENST00000576149 ZNF716A6NP11 495 aa8.82□□□□□ -1
VPS53-220ENST00000576149 OR2F2O95006 317 aa8.82□□□□□ -1
VPS53-220ENST00000576149 HPP00738 406 aa8.82□□□□□ -1
VPS53-220ENST00000576149 RFPL3SP0C7P2 107 aa8.82□□□□□ -1
VPS53-220ENST00000576149 FCGR2AP12318 317 aa8.82□□□□□ -1
VPS53-220ENST00000576149 OR2F1Q13607 317 aa8.82□□□□□ -1
VPS53-220ENST00000576149 ARFRP1Q13795 201 aa8.82□□□□□ -1
VPS53-220ENST00000576149 ZNF528Q3MIS6 628 aa8.82□□□□□ -1
VPS53-220ENST00000576149 SIGIRRQ6IA17 410 aa8.82□□□□□ -1
VPS53-220ENST00000576149 C6orf15Q6UXA7 325 aaPredicted RBP8.82□□□□□ -1
VPS53-220ENST00000576149 TIPARPQ7Z3E1 657 aaKnown RBP8.82□□□□□ -1
VPS53-220ENST00000576149 OR5M9Q8NGP3 310 aa8.82□□□□□ -1
VPS53-220ENST00000576149 CASTOR1Q8WTX7 329 aa8.82□□□□□ -1
VPS53-220ENST00000576149 TM2D1Q9BX74 207 aa8.82□□□□□ -1
VPS53-220ENST00000576149 SDHAF2Q9NX18 166 aa8.82□□□□□ -1
VPS53-220ENST00000576149 LOXL2Q9Y4K0 774 aa8.82□□□□□ -1
VPS53-220ENST00000576149 WDR87Q6ZQQ6 2873 aa8.81□□□□□ -1
VPS53-220ENST00000576149 CCDC187A0A096LP49 1063 aa8.81□□□□□ -1
VPS53-220ENST00000576149 LOC105371267A0A1B0GV96 52 aa8.81□□□□□ -1
VPS53-220ENST00000576149 SGCEO43556 437 aa8.81□□□□□ -1
VPS53-220ENST00000576149 SYNGR3O43761 229 aa8.81□□□□□ -1
VPS53-220ENST00000576149 SPDEFO95238 335 aa8.81□□□□□ -1
VPS53-220ENST00000576149 CST2P09228 141 aa8.81□□□□□ -1
VPS53-220ENST00000576149 M6PRP20645 277 aa8.81□□□□□ -1
VPS53-220ENST00000576149 ATP1B3P54709 279 aa8.81□□□□□ -1
VPS53-220ENST00000576149 SIGLEC14Q08ET2 396 aa8.81□□□□□ -1
VPS53-220ENST00000576149 RAB35Q15286 201 aa8.81□□□□□ -1
VPS53-220ENST00000576149 RSPO4Q2I0M5 234 aaPredicted RBP8.81□□□□□ -1
VPS53-220ENST00000576149 LRRC37A5PQ49AS3 106 aa8.81□□□□□ -1
VPS53-220ENST00000576149 TMEM128Q5BJH2 165 aa8.81□□□□□ -1
VPS53-220ENST00000576149 ACER2Q5QJU3 275 aa8.81□□□□□ -1
VPS53-220ENST00000576149 DRAM2Q6UX65 266 aa8.81□□□□□ -1
VPS53-220ENST00000576149 GALNTL5Q7Z4T8 443 aa8.81□□□□□ -1
VPS53-220ENST00000576149 TMEM185AQ8NFB2 350 aa8.81□□□□□ -1
VPS53-220ENST00000576149 CT55Q8WUE5 264 aa8.81□□□□□ -1
VPS53-220ENST00000576149 ADGRG7Q96K78 797 aa8.81□□□□□ -1
VPS53-220ENST00000576149 C5orf66Q9H5L9 145 aa8.81□□□□□ -1
VPS53-220ENST00000576149 NUP50Q9UKX7 468 aa8.81□□□□□ -1
VPS53-220ENST00000576149 RNF222A6NCQ9 220 aa8.81□□□□□ -1
VPS53-220ENST00000576149 DHRS7CA6NNS2 312 aa8.81□□□□□ -1
VPS53-220ENST00000576149 CXCL13O43927 109 aa8.81□□□□□ -1
VPS53-220ENST00000576149 RLN2P04090 185 aa8.81□□□□□ -1
VPS53-220ENST00000576149 AMY2BP19961 511 aa8.81□□□□□ -1
VPS53-220ENST00000576149 SERPINA2P20848 420 aa8.81□□□□□ -1
VPS53-220ENST00000576149 BLVRBP30043 206 aaPredicted RBP8.81□□□□□ -1
VPS53-220ENST00000576149 UBA52P62987 128 aaKnown RBP8.81□□□□□ -1
VPS53-220ENST00000576149 LPAL2Q16609 132 aa8.81□□□□□ -1
VPS53-220ENST00000576149 JMJD6Q6NYC1 403 aaPredicted RBP8.81□□□□□ -1
VPS53-220ENST00000576149 KCTD9Q7L273 389 aa8.81□□□□□ -1
VPS53-220ENST00000576149 PEG10Q86TG7 708 aaKnown RBP8.81□□□□□ -1
VPS53-220ENST00000576149 LHFPL1Q86WI0 220 aa8.81□□□□□ -1
VPS53-220ENST00000576149 OR5H2Q8NGV7 314 aa8.81□□□□□ -1
VPS53-220ENST00000576149 OR10K1Q8NGX5 313 aa8.81□□□□□ -1
VPS53-220ENST00000576149 CPT1CQ8TCG5 803 aa8.81□□□□□ -1
VPS53-220ENST00000576149 RHBDD1Q8TEB9 315 aa8.81□□□□□ -1
VPS53-220ENST00000576149 ROBO4Q8WZ75 1007 aa8.81□□□□□ -1
VPS53-220ENST00000576149 ST8SIA2Q92186 375 aa8.81□□□□□ -1
VPS53-220ENST00000576149 SLC39A7Q92504 469 aa8.81□□□□□ -1
VPS53-220ENST00000576149 PIGTQ969N2 578 aa8.81□□□□□ -1
VPS53-220ENST00000576149 DMRTA2Q96SC8 542 aa8.81□□□□□ -1
VPS53-220ENST00000576149 S100A13Q99584 98 aa8.81□□□□□ -1
VPS53-220ENST00000576149 DHRS9Q9BPW9 319 aa8.81□□□□□ -1
VPS53-220ENST00000576149 PECRQ9BY49 303 aa8.81□□□□□ -1
VPS53-220ENST00000576149 GLRX2Q9NS18 164 aa8.81□□□□□ -1
VPS53-220ENST00000576149 TMEM38BQ9NVV0 291 aa8.81□□□□□ -1
VPS53-220ENST00000576149 MRPS18CQ9Y3D5 142 aaKnown RBP8.81□□□□□ -1
VPS53-220ENST00000576149 KCNMB2Q9Y691 235 aa8.81□□□□□ -1
VPS53-220ENST00000576149 COL27A1Q8IZC6 1860 aaPredicted RBP8.81□□□□□ -1
VPS53-220ENST00000576149 SDK2Q58EX2 2172 aa8.8□□□□□ -1
VPS53-220ENST00000576149 ZSCAN5BA6NJL1 495 aa8.8□□□□□ -1
VPS53-220ENST00000576149 SERPINE3A8MV23 424 aa8.8□□□□□ -1
VPS53-220ENST00000576149 SERPINA7P05543 415 aa8.8□□□□□ -1
VPS53-220ENST00000576149 HPNP05981 417 aa8.8□□□□□ -1
VPS53-220ENST00000576149 CPT2P23786 658 aa8.8□□□□□ -1
VPS53-220ENST00000576149 FPR2P25090 351 aa8.8□□□□□ -1
VPS53-220ENST00000576149 CYB561P49447 251 aa8.8□□□□□ -1
VPS53-220ENST00000576149 STARP49675 285 aa8.8□□□□□ -1
VPS53-220ENST00000576149 NPY4RP50391 375 aa8.8□□□□□ -1
VPS53-220ENST00000576149 WIPI1Q5MNZ9 446 aaPredicted RBP8.8□□□□□ -1
VPS53-220ENST00000576149 ABLIM2Q6H8Q1 611 aa8.8□□□□□ -1
VPS53-220ENST00000576149 ZNF774Q6NX45 483 aa8.8□□□□□ -1
VPS53-220ENST00000576149 ACOT7LQ6ZUV0 252 aa8.8□□□□□ -1
VPS53-220ENST00000576149 AAED1Q7RTV5 226 aa8.8□□□□□ -1
VPS53-220ENST00000576149 SEMA6DQ8NFY4 1073 aa8.8□□□□□ -1
VPS53-220ENST00000576149 OR10D3Q8NH80 312 aa8.8□□□□□ -1
VPS53-220ENST00000576149 OR1S1Q8NH92 325 aa8.8□□□□□ -1
VPS53-220ENST00000576149 OR1F12Q8NHA8 337 aa8.8□□□□□ -1
VPS53-220ENST00000576149 OR2V1Q8NHB1 315 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms