RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 NUDT16L1Q9BRJ7 211 aaKnown RBP6.76□□□□□ -1.33
VPS53-214ENST00000572607 ADI1Q9BV57 179 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 C19orf24Q9BVV8 132 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 GPR84Q9NQS5 396 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 USE1Q9NZ43 259 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 DNAJB11Q9UBS4 358 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 NUFIP1Q9UHK0 495 aaKnown RBP6.76□□□□□ -1.33
VPS53-214ENST00000572607 NUP50Q9UKX7 468 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 SNX5Q9Y5X3 404 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 R4GMQ9 66 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 TANC2Q9HCD6 1990 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 CMYA5Q8N3K9 4069 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 KIR2DS1A0A191URI9 304 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 A0A1B0GVI7 797 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 NKX6-3A6NJ46 265 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 OR5B21A6NL26 309 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 H3BNX3 289 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 CDIPTO14735 213 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 TMPRSS2O15393 492 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 DHRS3O75911 302 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 RPP14O95059 124 aaKnown RBP6.75□□□□□ -1.33
VPS53-214ENST00000572607 IGLV1-40P01703 118 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 GYPAP02724 150 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 ALPLP05186 524 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 LIPFP07098 398 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 PPIAL4GP0DN37 164 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 ACKR3P25106 362 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 PSMB10P40306 273 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 CSNK2BP67870 215 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 ACTC1P68032 377 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 ACTA1P68133 377 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 EFNB1P98172 346 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 SRSF2Q01130 221 aaKnown RBP6.75□□□□□ -1.33
VPS53-214ENST00000572607 MFGE8Q08431 387 aaPredicted RBP6.75□□□□□ -1.33
VPS53-214ENST00000572607 ZIK1Q3SY52 487 aaPredicted RBP6.75□□□□□ -1.33
VPS53-214ENST00000572607 ZNF684Q5T5D7 378 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 ZBTB37Q5TC79 503 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 TEX36Q5VZQ5 186 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 PLCXD3Q63HM9 321 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 LYPD2Q6UXB3 125 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 WDR82Q6UXN9 313 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 USP43Q70EL4 1123 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 MOB3CQ70IA8 216 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 SLC36A1Q7Z2H8 476 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 WDR86Q86TI4 376 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 CBR4Q8N4T8 237 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 PNLDC1Q8NA58 520 aaKnown RBP6.75□□□□□ -1.33
VPS53-214ENST00000572607 OR10Z1Q8NGY1 313 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 OR51E1Q8TCB6 317 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 ZFAND2BQ8WV99 257 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 OR5P3Q8WZ94 311 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 EME1Q96AY2 570 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 C12orf43Q96C57 262 aaKnown RBP6.75□□□□□ -1.33
VPS53-214ENST00000572607 LYZL4Q96KX0 146 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 SLC6A7Q99884 636 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 APOL4Q9BPW4 351 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 MS4A7Q9GZW8 240 aaPredicted RBP6.75□□□□□ -1.33
VPS53-214ENST00000572607 TLNRD1Q9H1K6 362 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 PLEKHA1Q9HB21 404 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 S100A14Q9HCY8 104 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 OPN4Q9UHM6 478 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 OR52A1Q9UKL2 312 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 PIGLQ9Y2B2 252 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 GMPPBQ9Y5P6 360 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 DYSFO75923 2080 aa6.75□□□□□ -1.33
VPS53-214ENST00000572607 IGHV3OR15-7A0A075B7D8 119 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 A0A1W2PQL4 384 aaPredicted RBP6.74□□□□□ -1.33
VPS53-214ENST00000572607 METTL15A6NJ78 407 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 PRR32B1ATL7 298 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 ZNF732B4DXR9 585 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 NDUFB3O43676 98 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 MPZL2O60487 215 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 SULT1C4O75897 302 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 APOL3O95236 402 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 BAG2O95816 211 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 ECDO95905 644 aaPredicted RBP6.74□□□□□ -1.33
VPS53-214ENST00000572607 LHBP01229 141 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 FAHP16930 419 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 EGR1P18146 543 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 GLRA1P23415 457 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 MTNR1AP48039 350 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 GPM6AP51674 278 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 HILS1P60008 231 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 GMFBP60983 142 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 GNG3P63215 75 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 ACTG1P63261 375 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 PAX8Q06710 450 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 CEACAM21Q3KPI0 293 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 CEP78Q5JTW2 689 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 CLVS2Q5SYC1 327 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 PLEKHG7Q6ZR37 379 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 ZBTB49Q6ZSB9 765 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 DOK3Q7L591 496 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 FAM90A1Q86YD7 464 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 ELMOD2Q8IZ81 293 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 PQLC1Q8N2U9 271 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 CCDC54Q8NEL0 328 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 OR5A2Q8NGI9 324 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 ZNF671Q8TAW3 534 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 HPSE2Q8WWQ2 592 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms