RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 SOX7Q9BT81 388 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 ATG2AQ2TAZ0 1938 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF806P0C7X5 589 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 RCC1P18754 421 aaPredicted RBP9.48□□□□□ -0.89
CCDC40-207ENST00000572253 EN2P19622 333 aaPredicted RBP9.48□□□□□ -0.89
CCDC40-207ENST00000572253 PPT1P50897 306 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF2Q9BSG1 426 aaPredicted RBP9.48□□□□□ -0.89
CCDC40-207ENST00000572253 CRB3Q9BUF7 120 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 SMIM3Q9BZL3 60 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 PLEKHJ1Q9NW61 149 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 RP1L1Q8IWN7 2480 aaPredicted RBP9.48□□□□□ -0.89
CCDC40-207ENST00000572253 MEX3AA1L020 520 aaKnown RBP9.48□□□□□ -0.89
CCDC40-207ENST00000572253 CA11O75493 328 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 OPN1LWP04000 364 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 S100A8P05109 93 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 HPNP05981 417 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 CD5P06127 495 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 FCGR2AP12318 317 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF708P17019 499 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF133P52736 654 aaPredicted RBP9.48□□□□□ -0.89
CCDC40-207ENST00000572253 KMT5CQ86Y97 462 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 OR14K1Q8NGZ2 314 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 CHD9Q3L8U1 2897 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 IGHV1OR15-9A0A0B4J2B8 117 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 A0A1W2PR77 199 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 CTSDP07339 412 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-207ENST00000572253 FOLR2P14207 255 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 IL15RAQ13261 267 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 ABCA11PQ4W5N1 156 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 FAM219AQ8IW50 185 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 SEMA6DQ8NFY4 1073 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 SLC25A43Q8WUT9 341 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-207ENST00000572253 AKR1E2Q96JD6 320 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 LUZP4Q9P127 313 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 A0A1W2PNR3 127 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 M0R036 132 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 TRAF3IP2O43734 574 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-207ENST00000572253 FCGR3AP08637 254 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 PTGER4P35408 488 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 FAM3AP98173 230 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 PLPPR5Q32ZL2 321 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 TMEM268Q5VZI3 342 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 ANKRD37Q7Z713 158 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF784Q8NCA9 323 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-207ENST00000572253 DMBX1Q8NFW5 382 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 PP6455Q8WZ26 134 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 DUSP15Q9H1R2 295 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-207ENST00000572253 ARID1AO14497 2285 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 METTL12A8MUP2 240 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 ADAM10O14672 748 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 TMEM33P57088 247 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 RAB30Q15771 203 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 KCNMB1Q16558 191 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 LCN10Q6JVE6 187 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 LILRB1Q8NHL6 650 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-207ENST00000572253 PADI1Q9ULC6 663 aa9.47□□□□□ -0.89
CCDC40-207ENST00000572253 COLCA2A8K830 154 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 F5H5K5 113 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 DEDDO75618 318 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 RPS2P15880 293 aaKnown RBP9.46□□□□□ -0.89
CCDC40-207ENST00000572253 PAX6P26367 422 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 SFTPDP35247 375 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 CAMLGP49069 296 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF616Q08AN1 781 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 MFAP5Q13361 173 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 SLC25A53Q5H9E4 307 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 FAM69BQ5VUD6 431 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 OR2A2Q6IF42 318 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 DHRS11Q6UWP2 260 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 SYT13Q7L8C5 426 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 SLC38A9Q8NBW4 561 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 CCDC54Q8NEL0 328 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 SLC22A8Q8TCC7 542 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 ZC3H10Q96K80 434 aaKnown RBP9.46□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF319Q9P2F9 582 aa9.46□□□□□ -0.89
CCDC40-207ENST00000572253 IGKV1-9A0A0C4DH69 117 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 E5RGE8 158 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 PRH1P02810 166 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF14P17017 642 aaPredicted RBP9.46□□□□□ -0.9
CCDC40-207ENST00000572253 GABRR1P24046 479 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 ALDH3B1P43353 468 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 SNRPEP62304 92 aaKnown RBP9.46□□□□□ -0.9
CCDC40-207ENST00000572253 ACY1Q03154 408 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 GGNBP1Q5YKI7 109 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF561Q8N587 486 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 APCDD1LQ8NCL9 501 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 GJC3Q8NFK1 279 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 TCEAL7Q9BRU2 100 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 RNF122Q9H9V4 155 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 NSG2Q9Y328 171 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 ETV2O00321 342 aaPredicted RBP9.46□□□□□ -0.9
CCDC40-207ENST00000572253 DHRS3O75911 302 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 MT-ND4LP03901 98 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 SNRNP70P08621 437 aaKnown RBP9.46□□□□□ -0.9
CCDC40-207ENST00000572253 SMIM6P0DI80 62 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 MSR1P21757 451 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 CSNK1A1P48729 337 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 SLC35A1P78382 337 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 SECTM1Q8WVN6 248 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 TM2D1Q9BX74 207 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms