RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PEG10Q86TG7 708 aaKnown RBP17.4■□□□□ 0.38
VPS53-210ENST00000571456 C1orf87Q8N0U7 546 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 MAPK1IP1LQ8NDC0 245 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 OR11L1Q8NGX0 322 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 Q8TCH9 128 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 GPR148Q8TDV2 347 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 OR5P3Q8WZ94 311 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 TIMD4Q96H15 378 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 SOX7Q9BT81 388 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 CHST5Q9GZS9 411 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 FN3KRPQ9HA64 309 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 YAE1D1Q9NRH1 226 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 ZNF275Q9NSD4 429 aaPredicted RBP17.4■□□□□ 0.38
VPS53-210ENST00000571456 ZNF281Q9Y2X9 895 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 ANKRD61A6NGH8 418 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 ZNF850A8MQ14 1090 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 CLDN25C9JDP6 229 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 H0YL77 283 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 RP2O75695 350 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 FSTL3O95633 263 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 MT-ND2P03891 347 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 FAHP16930 419 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 GTF2A1P52655 376 aaPredicted RBP17.39■□□□□ 0.37
VPS53-210ENST00000571456 GNG3P63215 75 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 MAB21L1Q13394 359 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 MED22Q15528 200 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 FAM76BQ5HYJ3 339 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 UTS2BQ765I0 119 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 GCM1Q9NP62 436 aa17.39■□□□□ 0.37
VPS53-210ENST00000571456 LSM2Q9Y333 95 aaKnown RBP17.39■□□□□ 0.37
VPS53-210ENST00000571456 ALX3O95076 343 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 IRF2P14316 349 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 ZNF20P17024 532 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 RIN1Q13671 783 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 CNN3Q15417 329 aaKnown RBP17.38■□□□□ 0.37
VPS53-210ENST00000571456 MS4A15Q8N5U1 240 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 OR13C3Q8NGS6 347 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 FCGR1BQ92637 280 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 RAB1CQ92928 201 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 PDCD1LG2Q9BQ51 273 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 TMEM106BQ9NUM4 274 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 SLC7A11Q9UPY5 501 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 DHDHQ9UQ10 334 aa17.38■□□□□ 0.37
VPS53-210ENST00000571456 VWC2LB2RUY7 222 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 RNF223E7ERA6 249 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 CD5LO43866 347 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 LY6HO94772 140 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 TNFAIP8O95379 198 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 LALBAP00709 142 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 FAM157CP0CG43 387 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 COL8A2P25067 703 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 GPR6P46095 362 aaPredicted RBP17.37■□□□□ 0.37
VPS53-210ENST00000571456 MLLT11Q13015 90 aaPredicted RBP17.37■□□□□ 0.37
VPS53-210ENST00000571456 PLCXD3Q63HM9 321 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 XAF1Q6GPH4 301 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 ZNF367Q7RTV3 350 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 SERPINA12Q8IW75 414 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 RDH10Q8IZV5 341 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 PARP16Q8N5Y8 322 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 DNAAF1Q8NEP3 725 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 OR5D14Q8NGL3 314 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 TSEN15Q8WW01 171 aaKnown RBP17.37■□□□□ 0.37
VPS53-210ENST00000571456 CCL17Q92583 94 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 GHSRQ92847 366 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 YIPF5Q969M3 257 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 RNF170Q96K19 258 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 TLNRD1Q9H1K6 362 aa17.37■□□□□ 0.37
VPS53-210ENST00000571456 CDC14BO60729 498 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 CELP19835 753 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 PRKACBP22694 351 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 PSMA1P25786 263 aaKnown RBP17.36■□□□□ 0.37
VPS53-210ENST00000571456 CFHR2P36980 270 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 NR4A2P43354 598 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 TRAM1Q15629 374 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 CARTPTQ16568 116 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 MOB3CQ70IA8 216 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 OR1M1Q8NGA1 313 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 SGCDQ92629 289 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 UFD1Q92890 307 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 SPSB1Q96BD6 273 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 PGLYRP3Q96LB9 341 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 C19orf24Q9BVV8 132 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 MEGF8Q7Z7M0 2845 aa17.36■□□□□ 0.37
VPS53-210ENST00000571456 LOC100289279A0A1B0GTE1 492 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 LRP5LA4QPB2 252 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 OCM2P0CE71 109 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 CPT2P23786 658 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 MAPK3P27361 379 aaPredicted RBP17.35■□□□□ 0.37
VPS53-210ENST00000571456 FUT6P51993 359 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 CHN2P52757 468 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 TPBGQ13641 420 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 Q499Y3 187 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 ZNF773Q6PK81 442 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 MOGAT3Q86VF5 341 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 ZNF573Q86YE8 665 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 OR10Z1Q8NGY1 313 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 HPSE2Q8WWQ2 592 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 CPNE2Q96FN4 548 aaPredicted RBP17.35■□□□□ 0.37
VPS53-210ENST00000571456 ACOT13Q9NPJ3 140 aa17.35■□□□□ 0.37
VPS53-210ENST00000571456 PPIHO43447 177 aaKnown RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms