RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 RNF170Q96K19 258 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 SNTG1Q9NSN8 517 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 VPREB3Q9UKI3 123 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 KLHDC2Q9Y2U9 406 aa14.03□□□□□ -0.16
CLN3-216ENST00000565316 NKX6-3A6NJ46 265 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 ACOD1A6NK06 481 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 M0R1W7 72 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 AKR7A2O43488 359 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 TSPAN9O75954 239 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 CST1P01037 141 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 HMGN1P05114 100 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 T-ENOLP0DO92 83 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 CALB2P22676 271 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 POU1F1P28069 291 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 UBE2E1P51965 193 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 GMFBP60983 142 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 CDK5Q00535 292 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 PRB3Q04118 309 aaPredicted RBP14.02□□□□□ -0.17
CLN3-216ENST00000565316 SLC35D3Q5M8T2 416 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 CPOQ8IVL8 374 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 ZDHHC23Q8IYP9 409 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 PIGCQ92535 297 aa14.02□□□□□ -0.17
CLN3-216ENST00000565316 SLC25A10Q9UBX3 287 aaPredicted RBP14.02□□□□□ -0.17
CLN3-216ENST00000565316 TFF1P04155 84 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 ALOX5APP20292 161 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 SLC2A5P22732 501 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 DLX1P56177 255 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 KLRD1Q13241 179 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 OR5R1Q8NH85 324 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 H1FXQ92522 213 aaKnown RBP14.01□□□□□ -0.17
CLN3-216ENST00000565316 OR51I2Q9H344 312 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 METTL8Q9H825 291 aaKnown RBP14.01□□□□□ -0.17
CLN3-216ENST00000565316 TCF7L1Q9HCS4 588 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 NLKQ9UBE8 527 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 ZNF222Q9UK12 451 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 LRP12Q9Y561 859 aa14.01□□□□□ -0.17
CLN3-216ENST00000565316 IGKV1D-17A0A075B6S4 117 aa14□□□□□ -0.17
CLN3-216ENST00000565316 A0A0U1RQV5 110 aa14□□□□□ -0.17
CLN3-216ENST00000565316 ZNF816-ZNF321PA0A0X1KG74 233 aa14□□□□□ -0.17
CLN3-216ENST00000565316 BTBD17A6NE02 478 aa14□□□□□ -0.17
CLN3-216ENST00000565316 SLC22A31A6NKX4 558 aa14□□□□□ -0.17
CLN3-216ENST00000565316 OR2AT4A6NND4 320 aa14□□□□□ -0.17
CLN3-216ENST00000565316 OSMP13725 252 aa14□□□□□ -0.17
CLN3-216ENST00000565316 HOXB6P17509 224 aaKnown RBP14□□□□□ -0.17
CLN3-216ENST00000565316 SAA4P35542 130 aa14□□□□□ -0.17
CLN3-216ENST00000565316 TGFBR2P37173 567 aa14□□□□□ -0.17
CLN3-216ENST00000565316 GPM6AP51674 278 aa14□□□□□ -0.17
CLN3-216ENST00000565316 ACSM1Q08AH1 577 aa14□□□□□ -0.17
CLN3-216ENST00000565316 NCR3LG1Q68D85 454 aa14□□□□□ -0.17
CLN3-216ENST00000565316 DHRS7BQ6IAN0 325 aaPredicted RBP14□□□□□ -0.17
CLN3-216ENST00000565316 DEGS2Q6QHC5 323 aa14□□□□□ -0.17
CLN3-216ENST00000565316 KCTD8Q6ZWB6 473 aa14□□□□□ -0.17
CLN3-216ENST00000565316 PAPD5Q8NDF8 572 aaKnown RBP14□□□□□ -0.17
CLN3-216ENST00000565316 BBS1Q8NFJ9 593 aa14□□□□□ -0.17
CLN3-216ENST00000565316 LRGUKQ96M69 825 aa14□□□□□ -0.17
CLN3-216ENST00000565316 HIST1H2AAQ96QV6 131 aa14□□□□□ -0.17
CLN3-216ENST00000565316 YIPF3Q9GZM5 350 aa14□□□□□ -0.17
CLN3-216ENST00000565316 A0A1W2PRD5 423 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 A0A1W2PRF3 423 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 A0A1W2PRM7 423 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 MEIOCA2RUB1 952 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 AQP12BA6NM10 295 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 RHBDL1O75783 438 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 NDUFB7P17568 137 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 MAP2K3P46734 347 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 GNG3P63215 75 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 CEACAM21Q3KPI0 293 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 HCP5Q6MZN7 132 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 TRPM8Q7Z2W7 1104 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 AQP12AQ8IXF9 295 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 PNKDQ8N490 385 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 CANT1Q8WVQ1 401 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 CCDC124Q96CT7 223 aaKnown RBP13.99□□□□□ -0.17
CLN3-216ENST00000565316 DUS3LQ96G46 650 aaKnown RBP13.99□□□□□ -0.17
CLN3-216ENST00000565316 CLPTM1LQ96KA5 538 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 C1orf21Q9H246 121 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 FAM206AQ9NX38 181 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 TAS2R1Q9NYW7 299 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 LAMP5Q9UJQ1 280 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 MAB21L2Q9Y586 359 aa13.99□□□□□ -0.17
CLN3-216ENST00000565316 TRBV23-1A0A0A0MS06 115 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 ZNF732B4DXR9 585 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 PAHP00439 452 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 IGLV3-1P01715 115 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 PSG2P11465 335 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 ATP6V1B1P15313 513 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 GLRA1P23415 457 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 HCCSP53701 268 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 BEND2Q8NDZ0 799 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 OR5A2Q8NGI9 324 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 AQP3Q92482 292 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 UBE2FQ969M7 185 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 SDSLQ96GA7 329 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 AJUBAQ96IF1 538 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 ZNF556Q9HAH1 456 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 SLC25A19Q9HC21 320 aa13.98□□□□□ -0.17
CLN3-216ENST00000565316 A0A1W2PQ09 198 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 OR5B21A6NL26 309 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 GNGT2O14610 69 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 ANXA8P13928 327 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms