RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 FAM186AA6NE01 2351 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 NPIPA2E9PIF3 369 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 NPIPA3F8WFD2 350 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 DUS4LO95620 317 aaKnown RBP11.83□□□□□ -0.52
CLK3-215ENST00000564353 PTGFRP43088 359 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 HOXA1P49639 335 aaPredicted RBP11.83□□□□□ -0.52
CLK3-215ENST00000564353 MEOX2P50222 304 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 SUPT4H1P63272 117 aaKnown RBP11.83□□□□□ -0.52
CLK3-215ENST00000564353 AKIRIN2Q53H80 203 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 LYSMD4Q5XG99 296 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 OR5AP2Q8NGF4 316 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 OR14K1Q8NGZ2 314 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 MAFAQ8NHW3 353 aaPredicted RBP11.83□□□□□ -0.52
CLK3-215ENST00000564353 NANPQ8TBE9 248 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 ALKBH3Q96Q83 286 aaPredicted RBP11.83□□□□□ -0.52
CLK3-215ENST00000564353 RNF126Q9BV68 326 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 SLC2A8Q9NY64 477 aa11.83□□□□□ -0.52
CLK3-215ENST00000564353 AQP7P3A6NL99 342 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 OR2F2O95006 317 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 IL2RAP01589 272 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 OR2F1Q13607 317 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 RAB32Q13637 225 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 TAF9Q16594 264 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 RSPO1Q2MKA7 263 aaPredicted RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 PLEKHN1Q494U1 663 aaPredicted RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 HSD17B13Q7Z5P4 300 aaPredicted RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 C5orf24Q7Z6I8 188 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 ZDHHC22Q8N966 263 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 S100A13Q99584 98 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 RTBDNQ9BSG5 229 aaPredicted RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 SLC25A32Q9H2D1 315 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 MCTS1Q9ULC4 181 aaKnown RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 COLQQ9Y215 455 aaPredicted RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 FAM96BQ9Y3D0 163 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 CEP192Q8TEP8 1941 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 TMEM225BP0DP42 221 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 RCC1P18754 421 aaPredicted RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 NTF4P34130 210 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 RFC3P40938 356 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 ID4P47928 161 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 ZNF169Q14929 603 aaPredicted RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 GUCA2BQ16661 112 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 SP6Q3SY56 376 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 PAN3Q58A45 887 aaKnown RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 ZNF529Q6P280 563 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 CRIP3Q6Q6R5 217 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 AKR7LQ8NHP1 331 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 IFI44Q8TCB0 444 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 FBXO17Q96EF6 278 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 ESRP2Q9H6T0 727 aaKnown RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 DKKL1Q9UK85 242 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 SCGB1D2O95969 90 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 STARD6P59095 220 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 PCOLCEQ15113 449 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 TMEM128Q5BJH2 165 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 TSPO2Q5TGU0 170 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 C9orf135Q5VTT2 229 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 AADACL3Q5VUY0 350 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 ZNF585AQ6P3V2 769 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 MOB3CQ70IA8 216 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 GTPBP8Q8N3Z3 284 aaPredicted RBP11.82□□□□□ -0.52
CLK3-215ENST00000564353 SAP25Q8TEE9 199 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 TOMM40LQ969M1 308 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 SRXN1Q9BYN0 137 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 HRH4Q9H3N8 390 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 SIT1Q9Y3P8 196 aa11.82□□□□□ -0.52
CLK3-215ENST00000564353 AHCTF1Q8WYP5 2266 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 CFAP47Q6ZTR5 3102 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 DHRS7CA6NNS2 312 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 ACTL6AO96019 429 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 UMODP07911 640 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 B4GALT1P15291 398 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 ACKR3P25106 362 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 NUBP1P53384 320 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 ENDOGQ14249 297 aaKnown RBP11.81□□□□□ -0.52
CLK3-215ENST00000564353 CHRFAM7AQ494W8 412 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 TFAP2EQ6VUC0 442 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 DOK3Q7L591 496 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 TMEM17Q86X19 198 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 CARFQ8N187 725 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 EDAQ92838 391 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 FAAP24Q9BTP7 215 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 CHRDQ9H2X0 955 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 COA4Q9NYJ1 87 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 GPR132Q9UNW8 380 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 FLVCR1Q9Y5Y0 555 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 A0A0J9YW62 118 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 MED19A0JLT2 244 aaPredicted RBP11.81□□□□□ -0.52
CLK3-215ENST00000564353 PMS2P1A4D2B8 440 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 MFNGO00587 321 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 GP1BAP07359 652 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 SLC25A4P12235 298 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 MSR1P21757 451 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 MSX1P28360 303 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 FXYD4P59646 89 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 HGFACQ04756 655 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 AIMP2Q13155 320 aaKnown RBP11.81□□□□□ -0.52
CLK3-215ENST00000564353 DTWD2Q8NBA8 298 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 OR56B1Q8NGI3 324 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 OR6S1Q8NH40 331 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms