RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 DUX4Q9UBX2 424 aa13□□□□□ -0.33
VPS39-203ENST00000561797 OR52A1Q9UKL2 312 aa13□□□□□ -0.33
VPS39-203ENST00000561797 SOX21Q9Y651 276 aaPredicted RBP13□□□□□ -0.33
VPS39-203ENST00000561797 R4GMQ9 66 aa13□□□□□ -0.33
VPS39-203ENST00000561797 A0A1W2PQL4 384 aaPredicted RBP12.99□□□□□ -0.33
VPS39-203ENST00000561797 SRRM5B3KS81 715 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 P2RY10O00398 339 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 AKR7A2O43488 359 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 IGLV3-1P01715 115 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 ALPLP05186 524 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 KRT8P05787 483 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 PPIAL4GP0DN37 164 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 ATP6V1B1P15313 513 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 CFHR2P36980 270 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 EGR3Q06889 387 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 CEACAM21Q3KPI0 293 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 FAM76BQ5HYJ3 339 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 PLCXD3Q63HM9 321 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 BTN2A1Q7KYR7 527 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 OR10Z1Q8NGY1 313 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 DUX5Q96PT3 197 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 IMPAD1Q9NX62 359 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 KAAG1Q9UBP8 84 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 ENPP5Q9UJA9 477 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 SLC22A13Q9Y226 551 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 SNX5Q9Y5X3 404 aa12.99□□□□□ -0.33
VPS39-203ENST00000561797 H3BSH0 61 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 MTRF1O75570 445 aaKnown RBP12.98□□□□□ -0.33
VPS39-203ENST00000561797 RHBDL1O75783 438 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 DHRS3O75911 302 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 TFF1P04155 84 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 OR2T7P0C7T2 308 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 GNG3P63215 75 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 ODF4Q2M2E3 257 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 BRD3OSQ6XYD6 125 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 SLC36A1Q7Z2H8 476 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 C10orf67Q8IYJ2 551 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 ELMOD2Q8IZ81 293 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 CBR4Q8N4T8 237 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 FAM216BQ8N7L0 139 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 PNLDC1Q8NA58 520 aaKnown RBP12.98□□□□□ -0.33
VPS39-203ENST00000561797 OR5A2Q8NGI9 324 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 OR2T27Q8NH04 317 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 FAM216AQ8WUB2 273 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 RFKQ969G6 155 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 ZNF48Q96MX3 618 aaPredicted RBP12.98□□□□□ -0.33
VPS39-203ENST00000561797 OR51I2Q9H344 312 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 MOB1AQ9H8S9 216 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 USE1Q9NZ43 259 aa12.98□□□□□ -0.33
VPS39-203ENST00000561797 A0A1B0GTI1 187 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 A6NIN4 97 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 METTL15A6NJ78 407 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 ZNF879B4DU55 563 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 NDUFB3O43676 98 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 TOX4O94842 621 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 PLATP00750 562 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 NRASP01111 189 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 LIPFP07098 398 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 SFTPBP07988 381 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 GLRA1P23415 457 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 ALDH3A2P51648 485 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 UBA52P62987 128 aaKnown RBP12.97□□□□□ -0.33
VPS39-203ENST00000561797 BAMBIQ13145 260 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 IKZF1Q13422 519 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 ZNF684Q5T5D7 378 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 ZBTB37Q5TC79 503 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 C12orf54Q6X4T0 127 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 DOK3Q7L591 496 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 KRT74Q7RTS7 529 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 GCDHQ92947 438 aaPredicted RBP12.97□□□□□ -0.33
VPS39-203ENST00000561797 ITFG2Q969R8 447 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 HRASLS5Q96KN8 279 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 RAB3IPQ96QF0 476 aaPredicted RBP12.97□□□□□ -0.33
VPS39-203ENST00000561797 S100A14Q9HCY8 104 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 GPR173Q9NS66 373 aa12.97□□□□□ -0.33
VPS39-203ENST00000561797 STAB1Q9NY15 2570 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 DNAJC9-AS1A6NH13 148 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 NKX6-3A6NJ46 265 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 OR5B21A6NL26 309 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 HAX1O00165 279 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 ENTPD6O75354 484 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 ECDO95905 644 aaPredicted RBP12.96□□□□□ -0.33
VPS39-203ENST00000561797 SELLP14151 372 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 AMY2BP19961 511 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 MTNR1AP48039 350 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 ARF6P62330 175 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 ZNF85Q03923 595 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 TMED1Q13445 227 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 TUSC1Q2TAM9 212 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 TP53I3Q53FA7 332 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 GPR157Q5UAW9 335 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 METTL11BQ5VVY1 283 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 STUMQ69YW2 141 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 HAGHLQ6PII5 290 aaPredicted RBP12.96□□□□□ -0.33
VPS39-203ENST00000561797 OR14K1Q8NGZ2 314 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 ZNF671Q8TAW3 534 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 TRUB1Q8WWH5 349 aaKnown RBP12.96□□□□□ -0.33
VPS39-203ENST00000561797 C12orf43Q96C57 262 aaKnown RBP12.96□□□□□ -0.33
VPS39-203ENST00000561797 WDFY2Q96P53 400 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 AASSQ9UDR5 926 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms