RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SNTG1Q9NSN8 517 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 TBC1D23Q9NUY8 699 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 ZNF446Q9NWS9 450 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 DNAJB11Q9UBS4 358 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 FOXJ3Q9UPW0 622 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 LRP12Q9Y561 859 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 NOTCH3Q9UM47 2321 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 NKX6-3A6NJ46 265 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 FAM90A8PA6NJQ4 464 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 ZNF850A8MQ14 1090 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 VGLL3A8MV65 326 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 GLCEO94923 617 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 TFF1P04155 84 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 PSG2P11465 335 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 BLMHQ13867 455 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 LRRC75BQ2VPJ9 315 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 KLHDC1Q8N7A1 406 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 OR4C13Q8NGP0 309 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 OR6K6Q8NGW6 343 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 OTOSQ8NHW6 89 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 CDRT15Q96T59 188 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 CDCA4Q9BXL8 241 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 OR51I2Q9H344 312 aa13.34□□□□□ -0.27
CLN3-208ENST00000561505 CCNB2O95067 398 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 IFNGP01579 166 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 GSTT1P30711 240 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 MICAQ29983 383 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 AQP11Q8NBQ7 271 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 ZNRF1Q8ND25 227 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 OR51G2Q8NGK0 314 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 OR2T6Q8NHC8 308 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 RORBQ92753 470 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 PGAM5Q96HS1 289 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 RNF170Q96K19 258 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 SERTAD4Q9NUC0 356 aa13.33□□□□□ -0.28
CLN3-208ENST00000561505 TCRBV5S2A0A599 114 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 RIIAD1A6NNX1 92 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 ADARB2-AS1A8MUL3 147 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 CHST1O43916 411 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 MTRF1O75570 445 aaKnown RBP13.32□□□□□ -0.28
CLN3-208ENST00000561505 RHBDL1O75783 438 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 IGLV3-1P01715 115 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 ZNF3P17036 446 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 NDUFB7P17568 137 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 ERI1Q8IV48 349 aaKnown RBP13.32□□□□□ -0.28
CLN3-208ENST00000561505 ZNF454Q8N9F8 522 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 PAPD5Q8NDF8 572 aaKnown RBP13.32□□□□□ -0.28
CLN3-208ENST00000561505 OR6N2Q8NGY6 317 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 NIPAL2Q9H841 368 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 ARMC1Q9NVT9 282 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 VNN3Q9NY84 501 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 RASL12Q9NYN1 266 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 DNAJC27Q9NZQ0 273 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 ACTR3BQ9P1U1 418 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 NBEAL2Q6ZNJ1 2754 aa13.32□□□□□ -0.28
CLN3-208ENST00000561505 A0A0U1RQV5 110 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 A0A1W2PQ09 198 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 ACOD1A6NK06 481 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 PIN1P1O15428 100 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 NOS1APO75052 506 aaPredicted RBP13.31□□□□□ -0.28
CLN3-208ENST00000561505 H2BFMP0C1H6 154 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 GLRA1P23415 457 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 PSMA6P60900 246 aaKnown RBP13.31□□□□□ -0.28
CLN3-208ENST00000561505 GNG3P63215 75 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 EMX1Q04741 257 aaPredicted RBP13.31□□□□□ -0.28
CLN3-208ENST00000561505 GK3PQ14409 553 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 FAM189A2Q15884 450 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 CEACAM21Q3KPI0 293 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 CALHM1Q8IU99 346 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 MKXQ8IYA7 352 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 ZDHHC23Q8IYP9 409 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 OR8B12Q8NGG6 310 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 OR5A2Q8NGI9 324 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 AQP3Q92482 292 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 PIGCQ92535 297 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 ELAC2Q9BQ52 826 aaKnown RBP13.31□□□□□ -0.28
CLN3-208ENST00000561505 NPFFR1Q9GZQ6 430 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 WNT10AQ9GZT5 417 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 MAGIXQ9H6Y5 334 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 HEXA-AS1Q9H8Q6 139 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 MED20Q9H944 212 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 ZNF702PQ9H963 129 aa13.31□□□□□ -0.28
CLN3-208ENST00000561505 ELL3Q9HB65 397 aaPredicted RBP13.31□□□□□ -0.28
CLN3-208ENST00000561505 FAM183AA6NL82 134 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 H0YAE9 185 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 XPNPEP2O43895 674 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 SNX3O60493 162 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 ALX3O95076 343 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 SOX14O95416 240 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 LYNP07948 512 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 ATP6V1B1P15313 513 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 PPP1R8Q12972 351 aaKnown RBP13.3□□□□□ -0.28
CLN3-208ENST00000561505 LY6EQ16553 131 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 TMEM200BQ69YZ2 307 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 WFDC9Q8NEX5 89 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 ZNF671Q8TAW3 534 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 BRD7Q9NPI1 651 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 C19orf12Q9NSK7 152 aa13.3□□□□□ -0.28
CLN3-208ENST00000561505 KMT2CQ8NEZ4 4911 aaKnown RBP13.29□□□□□ -0.28
CLN3-208ENST00000561505 ANGPTL7O43827 346 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms