RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PRR32B1ATL7 298 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 ZNF732B4DXR9 585 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 M0R129 80 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 MAGEB4O15481 346 aaPredicted RBP8.41□□□□□ -1.06
LDLR-214ENST00000560628 PRKYO43930 277 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 MITFO75030 526 aaPredicted RBP8.41□□□□□ -1.06
LDLR-214ENST00000560628 RHBDL1O75783 438 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 DNAJC8O75937 253 aaPredicted RBP8.41□□□□□ -1.06
LDLR-214ENST00000560628 KNG1P01042 644 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 HOXB6P17509 224 aaKnown RBP8.41□□□□□ -1.06
LDLR-214ENST00000560628 NDUFB7P17568 137 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 DCTDP32321 178 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 MAP2K3P46734 347 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 GABRA2P47869 451 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 PTGES3Q15185 160 aaKnown RBP8.41□□□□□ -1.06
LDLR-214ENST00000560628 DGUOKQ16854 277 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 C11orf91Q3C1V1 193 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 FAM76BQ5HYJ3 339 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 KCTD18Q6PI47 426 aaPredicted RBP8.41□□□□□ -1.06
LDLR-214ENST00000560628 TMEM86BQ8N661 226 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 OR4F5Q8NH21 305 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 OR51E1Q8TCB6 317 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 SSMEM1Q8WWF3 244 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 C12orf43Q96C57 262 aaKnown RBP8.41□□□□□ -1.06
LDLR-214ENST00000560628 MED30Q96HR3 178 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 GAFA1Q96PS6 74 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 DCTN5Q9BTE1 182 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 MROQ9BYG7 248 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 PBOV1Q9GZY1 135 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 SLITRK2Q9H156 845 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 OR51I2Q9H344 312 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 BEX1Q9HBH7 125 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 ABCB9Q9NP78 766 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 FAM206AQ9NX38 181 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 IKZF2Q9UKS7 526 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 COPS3Q9UNS2 423 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 FAM96BQ9Y3D0 163 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 MMP24Q9Y5R2 645 aa8.41□□□□□ -1.06
LDLR-214ENST00000560628 A0A0U1RQV5 110 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 ZNF816-ZNF321PA0A0X1KG74 233 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 A0A1B0GVI7 797 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 NKX6-3A6NJ46 265 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 ACOD1A6NK06 481 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 OR2AT4A6NND4 320 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 RNASEK-C17orf49H0YIS7 233 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 DYNC1I1O14576 645 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 GSC2O15499 205 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 KCNAB3O43448 404 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 GPR137BO60478 399 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 GLRA1P23415 457 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 IER3P46695 156 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 GNG3P63215 75 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 RIPPLY1Q0D2K3 151 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 KLRD1Q13241 179 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 FAHD1Q6P587 224 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 DEGS2Q6QHC5 323 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 ZNF788Q6ZQV5 615 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 THAP5Q7Z6K1 395 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 CMTM4Q8IZR5 234 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 PNKDQ8N490 385 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 Q8N7P7 452 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 TCEANCQ8N8B7 351 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 OR5K1Q8NHB7 308 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 ANGPTL6Q8NI99 470 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 UTP4Q969X6 686 aaKnown RBP8.4□□□□□ -1.06
LDLR-214ENST00000560628 NRBF2Q96F24 287 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 OR8B4Q96RC9 309 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 APOL4Q9BPW4 351 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 CADM1Q9BY67 442 aaKnown RBP8.4□□□□□ -1.06
LDLR-214ENST00000560628 ELL3Q9HB65 397 aaPredicted RBP8.4□□□□□ -1.06
LDLR-214ENST00000560628 GPR84Q9NQS5 396 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 H2AFY2Q9P0M6 372 aaPredicted RBP8.4□□□□□ -1.06
LDLR-214ENST00000560628 NLKQ9UBE8 527 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 SLC25A10Q9UBX3 287 aaPredicted RBP8.4□□□□□ -1.06
LDLR-214ENST00000560628 GTF2A1LQ9UNN4 478 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 POMT1Q9Y6A1 747 aa8.4□□□□□ -1.06
LDLR-214ENST00000560628 IGKV1D-17A0A075B6S4 117 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 A0A1B0GUS0 222 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 CLPSL1A2RUU4 121 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 GPR37O15354 613 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 SIGLEC5O15389 551 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 ZNF254O75437 659 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 NDUFA7O95182 113 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 ACAA1P09110 424 aaPredicted RBP8.39□□□□□ -1.07
LDLR-214ENST00000560628 PSG2P11465 335 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 FAHP16930 419 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 EPHA2P29317 976 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 RIDAP52758 137 aaKnown RBP8.39□□□□□ -1.07
LDLR-214ENST00000560628 ROM1Q03395 351 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 MFGE8Q08431 387 aaPredicted RBP8.39□□□□□ -1.07
LDLR-214ENST00000560628 CEACAM21Q3KPI0 293 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 LCN1P1Q5VSP4 162 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 PLCXD3Q63HM9 321 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 OLFML2AQ68BL7 652 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 HAGHLQ6PII5 290 aaPredicted RBP8.39□□□□□ -1.07
LDLR-214ENST00000560628 TREML4Q6UXN2 200 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 PLEKHG7Q6ZR37 379 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 C17orf107Q6ZR85 190 aa8.39□□□□□ -1.07
LDLR-214ENST00000560628 MEPCEQ7L2J0 689 aaKnown RBP8.39□□□□□ -1.07
LDLR-214ENST00000560628 AMIGO2Q86SJ2 522 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms