RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 PDLIM4P50479 330 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 PSMD7P51665 324 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 PRSS12P56730 875 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 RPS11P62280 158 aaKnown RBP eCLIP7.84□□□□□ -1.15
LDLR-210ENST00000559340 CCL8P80075 99 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 DOC2BQ14184 412 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 HFEQ30201 348 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 HSD17B12Q53GQ0 312 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 LHFPL2Q6ZUX7 228 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 PEG10Q86TG7 708 aaKnown RBP7.84□□□□□ -1.15
LDLR-210ENST00000559340 CDH26Q8IXH8 852 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 OR1M1Q8NGA1 313 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 OR51A4Q8NGJ6 313 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 OR10AC1Q8NH08 325 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 ITLN1Q8WWA0 313 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 TMEM203Q969S6 136 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 ITPKCQ96DU7 683 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 MEGF10Q96KG7 1140 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 SORCS2Q96PQ0 1159 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 DERL3Q96Q80 235 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 OR2V2Q96R30 315 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 OR14A2Q96R54 314 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 LIME1Q9H400 295 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 TCF7L1Q9HCS4 588 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 EXOSC4Q9NPD3 245 aaKnown RBP7.84□□□□□ -1.15
LDLR-210ENST00000559340 GPR173Q9NS66 373 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 STUB1Q9UNE7 303 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 PPP1R3CQ9UQK1 317 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 SF3B6Q9Y3B4 125 aaKnown RBP7.84□□□□□ -1.15
LDLR-210ENST00000559340 DCHS2Q6V1P9 2916 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 CELSR2Q9HCU4 2923 aa7.84□□□□□ -1.15
LDLR-210ENST00000559340 LRBAP50851 2863 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 TRBV5-7A0A0A0MS05 114 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 IGHV1-69-2A0A0G2JMI3 117 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 FAM230AA0A1W2PPH8 454 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 LRP5LA4QPB2 252 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 TRIM64BA6NI03 449 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 A6NIN4 97 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 A6NLC8 198 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 H0YL77 283 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 GABRPO00591 440 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 PDCD5O14737 125 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 SULT1B1O43704 296 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 PTBP3O95758 552 aaKnown RBP7.83□□□□□ -1.16
LDLR-210ENST00000559340 GRPP07492 148 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 HCKP08631 526 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 SMIM18P0DKX4 95 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 DAOP14920 347 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 FSTP19883 344 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 MYL9P24844 172 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 AZGP1P25311 298 aaKnown RBP7.83□□□□□ -1.16
LDLR-210ENST00000559340 BDKRB2P30411 391 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 MAGEB1P43366 347 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 RPL5P46777 297 aaKnown RBP7.83□□□□□ -1.16
LDLR-210ENST00000559340 GPM6AP51674 278 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 TMEM33P57088 247 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 RPS25P62851 125 aaKnown RBP7.83□□□□□ -1.16
LDLR-210ENST00000559340 SSX1Q16384 188 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 ZNF181Q2M3W8 571 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 FAM76BQ5HYJ3 339 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 TMEM255AQ5JRV8 349 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 CEP78Q5JTW2 689 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 SHEQ5VZ18 495 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 CLEC2AQ6UVW9 174 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 PRSS57Q6UWY2 283 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 GPR141Q7Z602 305 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 MKXQ8IYA7 352 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 ZCCHC24Q8N2G6 241 aaKnown RBP7.83□□□□□ -1.16
LDLR-210ENST00000559340 NKAIN3Q8N8D7 197 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 PNLDC1Q8NA58 520 aaKnown RBP7.83□□□□□ -1.16
LDLR-210ENST00000559340 OR10AD1Q8NGE0 317 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 OR13C9Q8NGT0 318 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 OR10Z1Q8NGY1 313 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 RGP1Q92546 391 aaPredicted RBP7.83□□□□□ -1.16
LDLR-210ENST00000559340 NRGNQ92686 78 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 FOXRED1Q96CU9 486 aaPredicted RBP7.83□□□□□ -1.16
LDLR-210ENST00000559340 TIMD4Q96H15 378 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 GPER1Q99527 375 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 NOX4Q9NPH5 578 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 TMEM138Q9NPI0 162 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 PCDHB16Q9NRJ7 776 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 SNTG1Q9NSN8 517 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 POLDIP2Q9Y2S7 368 aa7.83□□□□□ -1.16
LDLR-210ENST00000559340 APCP25054 2843 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 hCG_1807616A0A1W2PRN6 198 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 NDUFS8O00217 210 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 SSX4O60224 188 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 LMX1BO60663 402 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 HPXP02790 462 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 UCHL1P09936 223 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 SRMP19623 302 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 FGF9P31371 208 aaPredicted RBP7.82□□□□□ -1.16
LDLR-210ENST00000559340 GP2P55259 537 aaKnown RBP7.82□□□□□ -1.16
LDLR-210ENST00000559340 MTCP1P56278 107 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 FABP5Q01469 135 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 MAB21L1Q13394 359 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 UBE2V2Q15819 145 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 GLT8D1Q68CQ7 371 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 CD200R1LQ6Q8B3 271 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 SATL1Q86VE3 508 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms