RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DNM1P34Q6PK57 102 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 LRP11Q86VZ4 500 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 C15orf54Q8N8G6 183 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 ABHD14AQ9BUJ0 271 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 OR10A2Q9H208 303 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 PLA2G2EQ9NZK7 142 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 AHCTF1Q8WYP5 2266 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 C5orf63A6NC05 138 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 AP4M1O00189 453 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 CDC14BO60729 498 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 IFNA17P01571 189 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 IL2RAP01589 272 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 GUCA1AP43080 201 aaPredicted RBP10.02□□□□□ -0.8
LDLR-208ENST00000558518 TMEM50BP56557 158 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 TOMM20Q15388 145 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 ISXQ2M1V0 245 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 CYB5R2Q6BCY4 276 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 PRRX2Q99811 253 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 GGACTQ9BVM4 153 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 KLHL13Q9P2N7 655 aa10.02□□□□□ -0.8
LDLR-208ENST00000558518 IGKV1D-8A0A087WSZ0 117 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 HSPB6O14558 160 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 IL33O95760 270 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 ZNF708P17019 499 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 PTGER4P35408 488 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 UBE2KP61086 200 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 RAP1AP62834 184 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 HSF1Q00613 529 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 SSX9Q7RTT3 188 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 LYZL2Q7Z4W2 148 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 TMEM123Q8N131 208 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 TOX2Q96NM4 488 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 OR51M1Q9H341 326 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 FBRSQ9HAH7 460 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 BORCS7-ASMTA0A0B4J1R7 106 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 F8VVB4 439 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 F8VWA3 439 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 LINC01565O15544 149 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 CYB5BO43169 146 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 SPRY1O43609 319 aaPredicted RBP10.02□□□□□ -0.81
LDLR-208ENST00000558518 RAMP1O60894 148 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 CST7O76096 145 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 FABP4P15090 132 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 IGFBP3P17936 291 aaPredicted RBP10.02□□□□□ -0.81
LDLR-208ENST00000558518 POLR2HP52434 150 aaKnown RBP10.02□□□□□ -0.81
LDLR-208ENST00000558518 PIGPP57054 158 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 DCDP81605 110 aaKnown RBP10.02□□□□□ -0.81
LDLR-208ENST00000558518 FAM69BQ5VUD6 431 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 FBXW12Q6X9E4 464 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 KCNG3Q8TAE7 436 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 OR5B2Q96R09 309 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 RTBDNQ9BSG5 229 aaPredicted RBP10.02□□□□□ -0.81
LDLR-208ENST00000558518 RAB18Q9NP72 206 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 ZNF581Q9P0T4 197 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 LUZP4Q9P127 313 aa10.02□□□□□ -0.81
LDLR-208ENST00000558518 H3BP45 60 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 MFNGO00587 321 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 NUDT21O43809 227 aaKnown RBP10.01□□□□□ -0.81
LDLR-208ENST00000558518 CST4P01036 141 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 H2AFB1P0C5Y9 115 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 FUT7Q11130 342 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 OR5T1Q8NG75 326 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 ASB13Q8WXK3 278 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 POM121Q96HA1 1249 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 PCDH15Q96QU1 1955 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 RHPN2P1A8MT19 583 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 RNF212Q495C1 297 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 STX12Q86Y82 276 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 SLC22A18ASQ8N1D0 253 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 FAAP24Q9BTP7 215 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 TMEM106CQ9BVX2 250 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 GPR61Q9BZJ8 451 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 VN1R1Q9GZP7 353 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 UNKLQ9H9P5 680 aaKnown RBP10.01□□□□□ -0.81
LDLR-208ENST00000558518 CRLF2Q9HC73 371 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 CHST11Q9NPF2 352 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 IL23AQ9NPF7 189 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 C19orf12Q9NSK7 152 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 ZNF319Q9P2F9 582 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 PCOLCE2Q9UKZ9 415 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 FRYQ5TBA9 3013 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 A0A1W2PR80 420 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 G3V3Y1 287 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 H0YL77 283 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 H3BMH7 237 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 SEMA4FO95754 770 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 BPNT1O95861 308 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 KIR2DL1P43626 348 aaPredicted RBP10.01□□□□□ -0.81
LDLR-208ENST00000558518 RSU1Q15404 277 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 TMEM92Q6UXU6 159 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 C5orf24Q7Z6I8 188 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 UBAC2Q8NBM4 344 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 OR8B12Q8NGG6 310 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 OR11L1Q8NGX0 322 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 SCGB3A2Q96PL1 93 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 TMEM100Q9NV29 134 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 C1orf123Q9NWV4 160 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 PADI1Q9ULC6 663 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 SLC7A11Q9UPY5 501 aa10.01□□□□□ -0.81
LDLR-208ENST00000558518 NCOA6Q14686 2063 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms