RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 HCRTR1O43613 425 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 DUX1O43812 170 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 CRTAPO75718 401 aaPredicted RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 HEXBP07686 556 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 FBXO45P0C2W1 286 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 SLC35G6P0C7Q6 338 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 GZMBP10144 247 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 FPR2P25090 351 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 FCGR2CP31995 323 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 TAGLN2P37802 199 aaKnown RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 ACAA2P42765 397 aaKnown RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 GPR3P46089 330 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ARF3P61204 181 aaPredicted RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 COL9A2Q14055 689 aaPredicted RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 C21orf62-AS1Q17RA5 79 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 ZNF550Q7Z398 422 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ZNF664Q8N3J9 261 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ZCCHC10Q8TBK6 192 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ROBO4Q8WZ75 1007 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 FAM46BQ96A09 425 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ANKRD9Q96BM1 317 aaPredicted RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 SLC25A36Q96CQ1 311 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 TM4SF19Q96DZ7 209 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 CCNL2Q96S94 520 aaPredicted RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 GOLT1BQ9Y3E0 138 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 PUS1Q9Y606 427 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP3-206ENST00000558157 A0A087WZY1 265 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 IGHV5-51A0A0C4DH38 117 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 NME2P1O60361 137 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 DFFBO76075 338 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 TXNDC12O95881 172 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 TRGC2P03986 189 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 CXCL1P09341 107 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ZNF888P0CJ79 500 aaPredicted RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 CDKN2AP42771 156 aaKnown RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 GLIPR1P48060 266 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 TMEM33P57088 247 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 PLAURQ03405 335 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 CFHR1Q03591 330 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 GFI1BQ5VTD9 330 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ASPHD2Q6ICH7 369 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 LANCL3Q6ZV70 420 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 TMEM183AQ8IXX5 376 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ZNF679Q8IYX0 411 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 MFSD8Q8NHS3 518 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 TMEM230Q96A57 120 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 RERGQ96A58 199 aaPredicted RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 KTI12Q96EK9 354 aaPredicted RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 OR10C1Q96KK4 312 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 CMKLR1Q99788 373 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 OR11A1Q9GZK7 315 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 C5orf66Q9H5L9 145 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 OR14J1Q9UGF5 321 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 ANAPC10Q9UM13 185 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 MRPS18BQ9Y676 258 aaKnown RBP9.64□□□□□ -0.87
USP3-206ENST00000558157 ASXL3Q9C0F0 2248 aa9.64□□□□□ -0.87
USP3-206ENST00000558157 A0A1B0GTH9 108 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 H3BQ15 152 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 DLEU1O43261 78 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 DEDDO75618 318 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 CTSBP07858 339 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 SNRPCP09234 159 aaKnown RBP9.63□□□□□ -0.87
USP3-206ENST00000558157 TRGC1P0CF51 173 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 NR2C1P13056 603 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 ZNF708P17019 499 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 CD200P41217 278 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 S100A10P60903 97 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 UBE2KP61086 200 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 H3F3AP84243 136 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 DCAF10Q5QP82 559 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 THEM4Q5T1C6 240 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 SLC35E3Q7Z769 313 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 BHLHE23Q8NDY6 225 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 OR10J5Q8NHC4 309 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 ADGRG7Q96K78 797 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 CCDC3Q9BQI4 270 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 ULBP3Q9BZM4 244 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 ZMAT3Q9HA38 289 aaKnown RBP9.63□□□□□ -0.87
USP3-206ENST00000558157 CRLF2Q9HC73 371 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 TMEM242Q9NWH2 141 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 SOHLH2Q9NX45 425 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 CYB5BO43169 146 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 OR13C7P0DN81 318 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 FOLR1P15328 257 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 TSPAN7P41732 249 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 P2RY1P47900 373 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 DLK1P80370 383 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 PLA2G2CQ5R387 149 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 FHL5Q5TD97 284 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 C5orf24Q7Z6I8 188 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 CSNK1A1LQ8N752 337 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 PLPP5Q8NEB5 264 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 OR4K15Q8NH41 348 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 RHBDD1Q8TEB9 315 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 ASB5Q8WWX0 329 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 LIPHQ8WWY8 451 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 RAB39BQ96DA2 213 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 OR8B4Q96RC9 309 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 INTS14Q96SY0 518 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms