RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-222ENST00000556768 C19orf18Q8NEA5 215 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 SEMA6DQ8NFY4 1073 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 OR1M1Q8NGA1 313 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 PIGCQ92535 297 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 C12orf43Q96C57 262 aaKnown RBP6.11□□□□□ -1.43
SCFD1-222ENST00000556768 FOXRED1Q96CU9 486 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-222ENST00000556768 MNTQ99583 582 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 DNAJB11Q9UBS4 358 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 FBLN5Q9UBX5 448 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 IKZF2Q9UKS7 526 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 RHBDD3Q9Y3P4 386 aa6.11□□□□□ -1.43
SCFD1-222ENST00000556768 hCG_38984A0A1B0GV85 526 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 CDIPTO14735 213 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 GYPAP02724 150 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 PSKH1P11801 424 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 ATP6V1B1P15313 513 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 DCTDP32321 178 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 RBMXP38159 391 aaKnown RBP6.1□□□□□ -1.43
SCFD1-222ENST00000556768 DAPP51397 102 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 RIDAP52758 137 aaKnown RBP6.1□□□□□ -1.43
SCFD1-222ENST00000556768 LGALS4P56470 323 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 EGR3Q06889 387 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 RIPPLY1Q0D2K3 151 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 FOXL1Q12952 345 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 ATP6AP1Q15904 470 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 STEAP3Q658P3 488 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 FAHD1Q6P587 224 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 LYPD2Q6UXB3 125 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 ZNF826PQ6ZT77 177 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 GID4Q8IVV7 300 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 ZDHHC23Q8IYP9 409 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 ZNF679Q8IYX0 411 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 SIGLECL1Q8N7X8 197 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 LRRC29Q8WV35 223 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 DVL3Q92997 716 aaPredicted RBP6.1□□□□□ -1.43
SCFD1-222ENST00000556768 UPRTQ96BW1 309 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 RNF170Q96K19 258 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 CNN2Q99439 309 aaKnown RBP6.1□□□□□ -1.43
SCFD1-222ENST00000556768 PCGF1Q9BSM1 259 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 OSBPL10Q9BXB5 764 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 LRP12Q9Y561 859 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 ORC6Q9Y5N6 252 aa6.1□□□□□ -1.43
SCFD1-222ENST00000556768 YLPM1P49750 1951 aaKnown RBP6.1□□□□□ -1.43
SCFD1-222ENST00000556768 A0A0U1RQV5 110 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 ZNF816-ZNF321PA0A0X1KG74 233 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 C5orf63A6NC05 138 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 ZNF850A8MQ14 1090 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 NDUFB3O43676 98 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 TOX4O94842 621 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 CST4P01036 141 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 FSHBP01225 129 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 LHBP01229 141 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 MRPL3P09001 348 aaKnown RBP6.09□□□□□ -1.43
SCFD1-222ENST00000556768 CFHR2P36980 270 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 FGF12P61328 243 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 UBA52P62987 128 aaKnown RBP6.09□□□□□ -1.43
SCFD1-222ENST00000556768 PRDX4Q13162 271 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 LRRC10Q5BKY1 277 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 NXNL2Q5VZ03 156 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 MEPCEQ7L2J0 689 aaKnown RBP6.09□□□□□ -1.43
SCFD1-222ENST00000556768 DOK3Q7L591 496 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 PRSS45Q7RTY3 260 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 CMTM4Q8IZR5 234 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 SVOPQ8N4V2 548 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 GCSAMQ8N6F7 178 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 TCEANCQ8N8B7 351 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 BBS1Q8NFJ9 593 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 ZNF671Q8TAW3 534 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 ST8SIA4Q92187 359 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 RFKQ969G6 155 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 MED30Q96HR3 178 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 AMELYQ99218 206 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 PKP2Q99959 881 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 WNK2Q9Y3S1 2297 aa6.09□□□□□ -1.43
SCFD1-222ENST00000556768 TENM1Q9UKZ4 2725 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 TRAV40A0A0B4J280 105 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 TMEM89A2RUT3 159 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 NKX6-3A6NJ46 265 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 ZNF879B4DU55 563 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 ZNF670-ZNF695F2Z2N8 137 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 PSMD9O00233 223 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 P2RY10O00398 339 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 DVL1O14640 695 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 CRYBA1P05813 215 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 SLC2A5P22732 501 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 COMPP49747 757 aaPredicted RBP6.09□□□□□ -1.44
SCFD1-222ENST00000556768 HCCSP53701 268 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 CXCR4P61073 352 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 GNG3P63215 75 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 PAX2Q02962 417 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 ROM1Q03395 351 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 KLF17Q5JT82 389 aaPredicted RBP6.09□□□□□ -1.44
SCFD1-222ENST00000556768 TEX36Q5VZQ5 186 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 ZNF322Q6U7Q0 402 aaPredicted RBP6.09□□□□□ -1.44
SCFD1-222ENST00000556768 WDR82Q6UXN9 313 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 ZNF841Q6ZN19 808 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 BTN2A1Q7KYR7 527 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 FAM90A1Q86YD7 464 aa6.09□□□□□ -1.44
SCFD1-222ENST00000556768 OR8B12Q8NGG6 310 aa6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms