RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PPIAL4FP0DN26 164 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 CD80P33681 288 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 MDH2P40926 338 aaKnown RBP11.84□□□□□ -0.51
PTCH1-226ENST00000553011 HSPA13P48723 471 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 GBX2P52951 348 aaPredicted RBP11.84□□□□□ -0.51
PTCH1-226ENST00000553011 CEACAM21Q3KPI0 293 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 TMEM155Q4W5P6 130 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 CLVS2Q5SYC1 327 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 TMEM244Q5VVB8 128 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 XAF1Q6GPH4 301 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 WDR82Q6UXN9 313 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 TMPRSS11AQ6ZMR5 421 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 KLHL36Q8N4N3 616 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 GCSAMQ8N6F7 178 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 ZNF676Q8N7Q3 588 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 LINC01356Q8N9X3 169 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 DEFB108BQ8NET1 73 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 LRRC29Q8WV35 223 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 RPL3LQ92901 407 aaKnown RBP11.84□□□□□ -0.51
PTCH1-226ENST00000553011 RAB39BQ96DA2 213 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 TLNRD1Q9H1K6 362 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 PLEKHA1Q9HB21 404 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 LPAR2Q9HBW0 351 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 FKBP14Q9NWM8 211 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 PPIAL4AQ9Y536 164 aa11.84□□□□□ -0.51
PTCH1-226ENST00000553011 TMEM210A6NLX4 147 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 CEACAM18A8MTB9 384 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 A8MV72 311 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-226ENST00000553011 INAFM1C9JVW0 142 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 CDIPTO14735 213 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 ISG15P05161 165 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 EGR1P18146 543 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 C21orf33P30042 268 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-226ENST00000553011 TGM4P49221 684 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 GNG3P63215 75 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 MRPL28Q13084 256 aaKnown RBP11.83□□□□□ -0.52
PTCH1-226ENST00000553011 FAM76BQ5HYJ3 339 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 MUC20Q8N307 709 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-226ENST00000553011 STX19Q8N4C7 294 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 SPICQ8N5J4 248 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 SCCPDHQ8NBX0 429 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 CCDC54Q8NEL0 328 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 OR5A2Q8NGI9 324 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 OR51A4Q8NGJ6 313 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 SGCDQ92629 289 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 PDCD1LG2Q9BQ51 273 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 TMEM246Q9BRR3 403 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 CHCHD3Q9NX63 227 aaKnown RBP11.83□□□□□ -0.52
PTCH1-226ENST00000553011 HHLA2Q9UM44 414 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 PCDHB10Q9UN67 800 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 ZFHX3Q15911 3703 aa11.83□□□□□ -0.52
PTCH1-226ENST00000553011 ANKRD61A6NGH8 418 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 OR5B21A6NL26 309 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 B4DSR2 109 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 PTGES3LE9PB15 166 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 ZFPL1O95159 310 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 LALBAP00709 142 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 LHBP01229 141 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 CCDC159P0C7I6 412 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 SEC61A1P61619 476 aaKnown RBP11.82□□□□□ -0.52
PTCH1-226ENST00000553011 MED21Q13503 144 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 ZNF404Q494X3 552 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 SFRP4Q6FHJ7 346 aaPredicted RBP11.82□□□□□ -0.52
PTCH1-226ENST00000553011 FAM166AQ6J272 317 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 OR52N1Q8NH53 320 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 OR5AK2Q8NH90 309 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 NPRL2Q8WTW4 380 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 GATAD2BQ8WXI9 593 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 FGGYQ96C11 551 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 ADAT3Q96EY9 351 aaPredicted RBP11.82□□□□□ -0.52
PTCH1-226ENST00000553011 CNBD2Q96M20 576 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 OR51I2Q9H344 312 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 PATZ1Q9HBE1 687 aaKnown RBP11.82□□□□□ -0.52
PTCH1-226ENST00000553011 ERVK-18Q9QC07 812 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 RAB26Q9ULW5 256 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 PCDHGB5Q9Y5G0 923 aa11.82□□□□□ -0.52
PTCH1-226ENST00000553011 SIRT4Q9Y6E7 314 aaPredicted RBP11.82□□□□□ -0.52
PTCH1-226ENST00000553011 ANK3Q12955 4377 aaKnown RBP11.81□□□□□ -0.52
PTCH1-226ENST00000553011 IGHV3OR15-7A0A075B7D8 119 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 TRBV2A0A0J9YWF9 115 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 TMEM212A6NML5 194 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 F5H0A9 414 aaPredicted RBP11.81□□□□□ -0.52
PTCH1-226ENST00000553011 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.81□□□□□ -0.52
PTCH1-226ENST00000553011 LGALS8O00214 317 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 RHBDL1O75783 438 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 ZNF12P17014 697 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 GMFBP60983 142 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 DOC2BQ14184 412 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 CDK5R1Q15078 307 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 UBE2V2Q15819 145 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 RPL22L1Q6P5R6 122 aaKnown RBP11.81□□□□□ -0.52
PTCH1-226ENST00000553011 LYPD2Q6UXB3 125 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 ZNF485Q8NCK3 441 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 TRMT10AQ8TBZ6 339 aaKnown RBP11.81□□□□□ -0.52
PTCH1-226ENST00000553011 HAVCR2Q8TDQ0 301 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 SEH1LQ96EE3 360 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 CHST5Q9GZS9 411 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 PAK1IP1Q9NWT1 392 aaPredicted RBP11.81□□□□□ -0.52
PTCH1-226ENST00000553011 BABAM2Q9NXR7 383 aa11.81□□□□□ -0.52
PTCH1-226ENST00000553011 SCN3BQ9NY72 215 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms