RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 B3GALT1Q9Y5Z6 326 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 TRIOBPQ9H2D6 2365 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 PCP4L1A6NKN8 68 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 DHRS7CA6NNS2 312 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 CEACAM18A8MTB9 384 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 FOXI3A8MTJ6 420 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF705EA8MWA4 302 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 SFTPBP07988 381 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 FCGR2AP12318 317 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 PNLIPP16233 465 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 CCL1P22362 96 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 GABRR1P24046 479 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 PTGER4P35408 488 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 NPBWR1P48145 328 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF385CQ66K41 422 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 RPL7L1Q6DKI1 246 aaKnown RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 OR2A2Q6IF42 318 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 PRSS54Q6PEW0 395 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 CLEC9AQ6UXN8 241 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 FAM89BQ8N5H3 189 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 NAXEQ8NCW5 288 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 SPACA9Q96E40 222 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 CDC6Q99741 560 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 URM1Q9BTM9 101 aaKnown RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 PECRQ9BY49 303 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 CHRDQ9H2X0 955 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF160Q9HCG1 818 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 TREM1Q9NP99 234 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 TMEM100Q9NV29 134 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 HPF1Q9NWY4 346 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 OCIAD1Q9NX40 245 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF629Q9UEG4 869 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 PISDQ9UG56 409 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 IGLV3-32A0A0A0MS00 114 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 IGHV5-10-1A0A0J9YXX1 117 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 RAB19A4D1S5 217 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 AQP7P3A6NL99 342 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 ANGPTL7O43827 346 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 NFYBP25208 207 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 MSX1P28360 303 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 SPEM2Q0P670 501 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 SCRN3Q0VDG4 424 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 ENDOGQ14249 297 aaKnown RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 COL19A1Q14993 1142 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 SNAI3Q3KNW1 292 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 H3F3CQ6NXT2 135 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 CCDC36Q8IYA8 594 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 POC1AQ8NBT0 407 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 OR5L2Q8NGL0 311 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 OR2AE1Q8NHA4 323 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 RNF141Q8WVD5 230 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 RBM24Q9BX46 236 aaKnown RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 DEFB126Q9BYW3 111 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 SLC5A7Q9GZV3 580 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 SLC26A1Q9H2B4 701 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 LIME1Q9H400 295 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 RAB18Q9NP72 206 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 PLA2G2EQ9NZK7 142 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 RARRES3Q9UL19 164 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 PIGLQ9Y2B2 252 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 CHCHD2Q9Y6H1 151 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF407Q9C0G0 2248 aa6.57□□□□□ -1.36
LIMA1-213ENST00000552720 LY6G6EA0A0G2JKS1 128 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 AGPAT2O15120 278 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 SPRY1O43609 319 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 SIGLEC6O43699 453 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 FARS2O95363 451 aaKnown RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 SERPINA5P05154 406 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 CD63P08962 238 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 GLI4P10075 376 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 NME2P22392 152 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 IL32P24001 234 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 RRADP55042 308 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 KCNMB1Q16558 191 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 PNLIPRP3Q17RR3 467 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 HFEQ30201 348 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 HAGHLQ6PII5 290 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 BRICD5Q6PL45 260 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 UQCC3Q6UW78 93 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 Q7L0L9 218 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 C20orf196Q8IYI0 205 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 DNASE2BQ8WZ79 361 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 DYRK2Q92630 601 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 ARL11Q969Q4 196 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 CCDC74BQ96LY2 380 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 JSRP1Q96MG2 331 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 PHF7Q9BWX1 381 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 SMIM3Q9BZL3 60 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 PARP12Q9H0J9 701 aaKnown RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 GPR173Q9NS66 373 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 U3KQA8 63 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 DOCK7Q96N67 2140 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 LRP3O75074 770 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 FBXO24O75426 580 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 IGLV3-1P01715 115 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 CSTBP04080 98 aaKnown RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 CCL3P10147 92 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 NAT2P11245 290 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 PRF1P14222 555 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 MUC1P15941 1255 aaPredicted RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms