RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 SPAG4Q9NPE6 437 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 PNRC2Q9NPJ4 139 aaKnown RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 PAPOLBQ9NRJ5 636 aaKnown RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 HAO2Q9NYQ3 351 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 ANGPT4Q9Y264 503 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 TIMM10BQ9Y5J6 103 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 IGHV3OR15-7A0A075B7D8 119 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 BLOC1S5-TXNDC5H3BN57 136 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 COPEO14579 308 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 ANGPTL7O43827 346 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 KRT75O95678 551 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 HIST1H2ABP04908 130 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 ABHD2P08910 425 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 CST2P09228 141 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 UMPSP11172 480 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 UGT2B15P54855 530 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 RGS8P57771 180 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-204ENST00000549064 NCALDP61601 193 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 CD47Q08722 323 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 LRRC75BQ2VPJ9 315 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 CCDC92Q53HC0 331 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-204ENST00000549064 TCTEX1D4Q5JR98 221 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 OTPQ5XKR4 325 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 SLC25A47Q6Q0C1 308 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 PQLC2Q6ZP29 291 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 HIST3H2AQ7L7L0 130 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 Q8N2B8 174 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 LY6G5BQ8NDX9 201 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 OR51G2Q8NGK0 314 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 SETD6Q8TBK2 473 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 AENQ8WTP8 325 aaKnown RBP5.21□□□□□ -1.58
LIMA1-204ENST00000549064 DPF1Q92782 380 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 ERGIC1Q969X5 290 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF582Q96NG8 517 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-204ENST00000549064 RCHY1Q96PM5 261 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 OR52E6Q96RD3 313 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 ECSITQ9BQ95 431 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 CDCA4Q9BXL8 241 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 WDR76Q9H967 626 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 TMEM27Q9HBJ8 222 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 NANSQ9NR45 359 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 HECTD4Q9Y4D8 3996 aa5.21□□□□□ -1.58
LIMA1-204ENST00000549064 A0A1W2PRG6 482 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 OOEPA6NGQ2 149 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 H0YAE9 185 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 H0YHG0 523 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 FBP2O00757 339 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 RFXANKO14593 260 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 RIPK2O43353 540 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 ECDO95905 644 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-204ENST00000549064 THY1P04216 161 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 ASAH2BP0C7U1 165 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 TUBG1P23258 451 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 DCTDP32321 178 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 RPL18Q07020 188 aaKnown RBP5.2□□□□□ -1.58
LIMA1-204ENST00000549064 SNAPC1Q16533 368 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF674Q2M3X9 581 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 ARMC4Q5T2S8 1044 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 XP32Q5T750 250 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 SUMO4Q6EEV6 95 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 HCP5Q6MZN7 132 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 FBXW12Q6X9E4 464 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF826PQ6ZT77 177 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 FAM57BQ71RH2 274 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 NANOGNBQ7Z5D8 188 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 SLC30A8Q8IWU4 369 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 ZDHHC23Q8IYP9 409 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 OR5AU1Q8NGC0 362 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 C8orf46Q8TAG6 207 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 BBS10Q8TAM1 723 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 PIFOQ8TCI5 191 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 FAM234AQ9H0X4 552 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 TPT1P8Q9HAU6 139 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 BCL2L10Q9HD36 194 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 RAB18Q9NP72 206 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 SLCO1B3Q9NPD5 702 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 TUBG2Q9NRH3 451 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 RNF7Q9UBF6 113 aa5.2□□□□□ -1.58
LIMA1-204ENST00000549064 PLECQ15149 4684 aaKnown RBP5.19□□□□□ -1.58
LIMA1-204ENST00000549064 TRAV38-1A0A0B4J264 116 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 TCRBV4S1A1TA0A5B7 111 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 CGB1A6NKQ9 187 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 SMIM23A6NLE4 172 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 IQCF6A8MYZ5 107 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 CENPBD1B2RD01 187 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 SGCEO43556 437 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 SYNGR1O43759 233 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 FMO6PO60774 539 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 LYPD3O95274 346 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 IFNW1P05000 195 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 COX5BP10606 129 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 KRT4P19013 534 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 BGNP21810 368 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 AQP2P41181 271 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 CD200P41217 278 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 RGS6P49758 472 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 UBE2E1P51965 193 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 PCBD1P61457 104 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 BLCAPP62952 87 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms