RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 IGKV1D-8A0A087WSZ0 117 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 TUBAL3A6NHL2 446 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 UMAD1C9J7I0 102 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 HMGB3O15347 200 aaKnown RBP12.96□□□□□ -0.33
HOXC11-202ENST00000546378 DHODHQ02127 395 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 NHLH2Q02577 135 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 CATSPERDQ86XM0 798 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 SPEM1Q8N4L4 309 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 OR14K1Q8NGZ2 314 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 OR6S1Q8NH40 331 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 RARRES2Q99969 163 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 FAAP24Q9BTP7 215 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 TTRP02766 147 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 BMP5P22003 454 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 SLC25A1P53007 311 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 HSF1Q00613 529 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 ZNF260Q3ZCT1 412 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 SLC22A24Q8N4F4 322 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 EXD3Q8N9H8 876 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 OR11L1Q8NGX0 322 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 FNDC9Q8TBE3 224 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 ABHD14AQ9BUJ0 271 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 MED9Q9NWA0 146 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 RAB22AQ9UL26 194 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 FLVCR1Q9Y5Y0 555 aa12.96□□□□□ -0.33
HOXC11-202ENST00000546378 SULF2Q8IWU5 870 aa12.96□□□□□ -0.34
HOXC11-202ENST00000546378 TMEM123Q8N131 208 aa12.96□□□□□ -0.34
HOXC11-202ENST00000546378 LRRC75AQ8NAA5 344 aa12.96□□□□□ -0.34
HOXC11-202ENST00000546378 SLC22A8Q8TCC7 542 aa12.96□□□□□ -0.34
HOXC11-202ENST00000546378 TXNIPQ9H3M7 391 aa12.96□□□□□ -0.34
HOXC11-202ENST00000546378 NBASA2RRP1 2371 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 C7orf77A4D0Y5 90 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 SOX15O60248 233 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 CSTBP04080 98 aaKnown RBP12.95□□□□□ -0.34
HOXC11-202ENST00000546378 EDN3P14138 238 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 LAP3P28838 519 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 USF2Q15853 346 aaPredicted RBP12.95□□□□□ -0.34
HOXC11-202ENST00000546378 ACER2Q5QJU3 275 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 TMEM244Q5VVB8 128 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 GPBAR1Q8TDU6 330 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 DAZLQ92904 295 aaKnown RBP12.95□□□□□ -0.34
HOXC11-202ENST00000546378 LPAR3Q9UBY5 353 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 A0A0A6YYD4 124 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 CFIP05156 583 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 MLF1P58340 268 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF528Q3MIS6 628 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 HIST2H3AQ71DI3 136 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 RNASE11Q8TAA1 199 aaKnown RBP12.95□□□□□ -0.34
HOXC11-202ENST00000546378 KCNJ16Q9NPI9 418 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF275Q9NSD4 429 aaPredicted RBP12.95□□□□□ -0.34
HOXC11-202ENST00000546378 ABCA1O95477 2261 aa12.95□□□□□ -0.34
HOXC11-202ENST00000546378 OR5H15A6NDH6 313 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF726A6NNF4 738 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 BGLAPP02818 100 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 CRABP1P29762 137 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 SLC26A5P58743 744 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 TMEM128Q5BJH2 165 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 VASH2Q86V25 355 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 NECAP1Q8NC96 275 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 CA5BP1Q8WTZ4 195 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 MRI1Q9BV20 369 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 DENND4AQ7Z401 1863 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 A8MVM7 634 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 PLPP3O14495 311 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 DUS4LO95620 317 aaKnown RBP12.94□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF16P17020 682 aaPredicted RBP12.94□□□□□ -0.34
HOXC11-202ENST00000546378 IZUMO4Q1ZYL8 232 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 CYB5R2Q6BCY4 276 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 OR13G1Q8NGZ3 307 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 GSN-AS1Q9NRJ2 163 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 IGLV1-36A0A0B4J1U3 117 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 A6NCN8 305 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 NPIPB9F8W1W9 429 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 BCAT2O15382 392 aaPredicted RBP12.94□□□□□ -0.34
HOXC11-202ENST00000546378 PPP1CCP36873 323 aaKnown RBP12.94□□□□□ -0.34
HOXC11-202ENST00000546378 CX3CR1P49238 355 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 STARD6P59095 220 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 HABP2Q14520 560 aaPredicted RBP12.94□□□□□ -0.34
HOXC11-202ENST00000546378 LYZL2Q7Z4W2 148 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 NELFAQ9H3P2 528 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF304Q9HCX3 659 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 PI4KAP42356 2102 aa12.94□□□□□ -0.34
HOXC11-202ENST00000546378 IFNA21P01568 189 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 QDPRP09417 244 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 FOLR1P15328 257 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 FBLP22087 321 aaKnown RBP12.93□□□□□ -0.34
HOXC11-202ENST00000546378 HOXA1P49639 335 aaPredicted RBP12.93□□□□□ -0.34
HOXC11-202ENST00000546378 EFNA3P52797 238 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 CLDN17P56750 224 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 KIAA0141Q14154 515 aaPredicted RBP12.93□□□□□ -0.34
HOXC11-202ENST00000546378 OR8B12Q8NGG6 310 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 C1orf198Q9H425 327 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF160Q9HCG1 818 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 G6PC2Q9NQR9 355 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 PLEK2Q9NYT0 353 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 PTPRZ1P23471 2315 aaPredicted RBP12.93□□□□□ -0.34
HOXC11-202ENST00000546378 HOXC4P09017 264 aaPredicted RBP12.93□□□□□ -0.34
HOXC11-202ENST00000546378 MPPED2Q15777 294 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 SGCBQ16585 318 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 ALKBH2Q6NS38 261 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms