RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 OR51B6Q9H340 312 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 SLC17A5Q9NRA2 495 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 R4GMQ9 66 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 ARGFXA6NJG6 315 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 ONECUT2O95948 504 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 PRTGQ2VWP7 1150 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 NANOS1Q8WY41 292 aaKnown RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 TMEM18Q96B42 140 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 TXN2Q99757 166 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 OR6C6A6NF89 314 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 MSGN1A6NI15 193 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 ZNF729A6NN14 1252 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 EN2P19622 333 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 DUSP1P28562 367 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 UBE2V2Q15819 145 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 COL13A1Q5TAT6 717 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 TMEM268Q5VZI3 342 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 TGIF2LXQ8IUE1 241 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 DTWD2Q8NBA8 298 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 OR56B2PQ8NGI1 322 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 SLAMF6Q96DU3 332 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 MMP25Q9NPA2 562 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 GPR84Q9NQS5 396 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 FGF21Q9NSA1 209 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 METTL1Q9UBP6 276 aaKnown RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 PISDQ9UG56 409 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 MCTS1Q9ULC4 181 aaKnown RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 MRPS18BQ9Y676 258 aaKnown RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 RALGAPA2Q2PPJ7 1873 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 BCAT2O15382 392 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 IL9P15248 144 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 TBPP20226 339 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 FHITP49789 147 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 CBLN3Q6UW01 205 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 RNF128Q8TEB7 428 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 LIN37Q96GY3 246 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 DUSP23Q9BVJ7 150 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 SARGQ9BW04 601 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 TEX101Q9BY14 249 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 ULBP2Q9BZM5 246 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 NMES1Q9C002 83 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 THAP10Q9P2Z0 257 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 SLC5A6Q9Y289 635 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 TERTO14746 1132 aaKnown RBP12.71□□□□□ -0.37
LIMS1-215ENST00000544547 HCRTR1O43613 425 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 FBP1P09467 338 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 IRF2P14316 349 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 DLK1P80370 383 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 FMODQ06828 376 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 PMS2P11Q13670 270 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 MRPS2Q9Y399 296 aaKnown RBP12.71□□□□□ -0.37
LIMS1-215ENST00000544547 LINC01553A4QN01 128 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 CEACAM5P06731 702 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 ZBTB25P24278 435 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 DHODHQ02127 395 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 TMEM176BQ3YBM2 270 aaPredicted RBP12.71□□□□□ -0.37
LIMS1-215ENST00000544547 TSPO2Q5TGU0 170 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 C1orf140Q5VVS0 124 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 TCTN2Q96GX1 697 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 SMIM7Q9BQ49 75 aa12.71□□□□□ -0.37
LIMS1-215ENST00000544547 RCL1Q9Y2P8 373 aaKnown RBP12.71□□□□□ -0.37
LIMS1-215ENST00000544547 CD300LBA8K4G0 201 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 H3BQ15 152 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 MST1P26927 711 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 GDF1P27539 372 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 CTHP32929 405 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 PCP4P48539 62 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 DCAF7P61962 342 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 TIPARPQ7Z3E1 657 aaKnown RBP12.71□□□□□ -0.38
LIMS1-215ENST00000544547 MRPL38Q96DV4 380 aaKnown RBP12.71□□□□□ -0.38
LIMS1-215ENST00000544547 ATG101Q9BSB4 218 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 DNAJB11Q9UBS4 358 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 DOCK4Q8N1I0 1966 aa12.71□□□□□ -0.38
LIMS1-215ENST00000544547 TGFBR3Q03167 851 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 C1QL3Q5VWW1 255 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 ANKRD33Q7Z3H0 272 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 LURAP1LQ8IV03 231 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 C19orf47Q8N9M1 422 aaKnown RBP12.7□□□□□ -0.38
LIMS1-215ENST00000544547 LRRC3BQ96PB8 259 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 DMRTA2Q96SC8 542 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF286AQ9HBT8 521 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 TBX21Q9UL17 535 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 XKRY2A2RUG3 117 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 FAM24AA6NFZ4 105 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 SOCS1O15524 211 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 PDGFBP01127 241 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-215ENST00000544547 CISD3P0C7P0 127 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 PPICP45877 212 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF124Q15973 351 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 PRAMEF20Q5VT98 475 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 KCNIP4Q6PIL6 250 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 BAGE3Q86Y29 109 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 BAGE2Q86Y30 109 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 AGBL5Q8NDL9 886 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 TSPAN32Q96QS1 320 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 LANCL2Q9NS86 450 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 CARHSP1Q9Y2V2 147 aaKnown RBP12.7□□□□□ -0.38
LIMS1-215ENST00000544547 CENPFP49454 3210 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 BLACEA4D250 179 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 CBY3A6NI87 242 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms