RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-210	ENST00000542033	PPIH	O43447	177 aa	Known RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	RNF13	O43567	381 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ORC5	O43913	435 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	HPGDS	O60760	199 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SC5D	O75845	299 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ATG12	O94817	140 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	TTC4	O95801	387 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	C6orf47	O95873	294 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	NDUFB10	O96000	172 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	IGF2	P01344	180 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	THY1	P04216	161 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CRYBA1	P05813	215 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	HOXB7	P09629	217 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CSF3	P09919	207 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	H2AFZ	P0C0S5	128 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	OR10J4	P0C629	311 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	UBC	P0CG48	685 aa	Known RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	BCKDHA	P12694	445 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SELE	P16581	610 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	PGAM1	P18669	254 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	TBP	P20226	339 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SERPINA2	P20848	420 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	GSTM3	P21266	225 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	FGF7	P21781	194 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	GATA2	P23769	480 aa	Predicted RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	MYL9	P24844	172 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CD82	P27701	267 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SAA4	P35542	130 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	AKR1C3	P42330	323 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	STK19	P49842	368 aa	Predicted RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	RPL14	P50914	215 aa	Known RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	ATP4B	P51164	291 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	EFNA3	P52797	238 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	BID	P55957	195 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	RRAS2	P62070	204 aa	Predicted RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	NTHL1	P78549	312 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	KLRC3	Q07444	240 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	FABP9	Q0Z7S8	132 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	RAB31	Q13636	194 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SLC10A1	Q14973	349 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ATXN7L3	Q14CW9	347 aa	Predicted RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	SHH	Q15465	462 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CD226	Q15762	336 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SYPL1	Q16563	259 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	LRRC26	Q2I0M4	334 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ISX	Q2M1V0	245 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	TMEM249	Q2WGJ8	235 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	PGGHG	Q32M88	737 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	COX19	Q49B96	90 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	PYCR3	Q53H96	274 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	EIPR1	Q53HC9	387 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	C5orf47	Q569G3	176 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	MUC21	Q5SSG8	566 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	C10orf91	Q5T1B1	145 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	MARC1	Q5VT66	337 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ZNF691	Q5VV52	312 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	WDR25	Q64LD2	544 aa	Predicted RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	EIF5AL1	Q6IS14	154 aa	Known RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	ZNF774	Q6NX45	483 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	DNM1P34	Q6PK57	102 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SCIMP	Q6UWF3	145 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	HACD2	Q6Y1H2	254 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CYS1	Q717R9	158 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	H2AFV	Q71UI9	128 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	NUFIP2	Q7Z417	695 aa	Known RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	CEACAM19	Q7Z692	300 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CDC20B	Q86Y33	519 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CALHM1	Q8IU99	346 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	BAP18	Q8IXM2	172 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	HS3ST5	Q8IZT8	346 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	DHRSX	Q8N5I4	330 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CLDN19	Q8N6F1	224 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	FAM86B1	Q8N7N1	296 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SAMD12	Q8N8I0	201 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CYB561A3	Q8NBI2	242 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	DUSP18	Q8NEJ0	188 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ATP6V1C2	Q8NEY4	427 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	BEST4	Q8NFU0	473 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	STXBP6	Q8NFX7	210 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	OR4C5	Q8NGB2	326 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	OR5L1	Q8NGL2	311 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	OR8D4	Q8NGM9	314 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	OR9Q1	Q8NGQ5	310 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	OR2T4	Q8NH00	348 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	OR51F2	Q8NH61	342 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	MCFD2	Q8NI22	146 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ZNF431	Q8TF32	576 aa	Predicted RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	ORAOV1	Q8WV07	137 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CYGB	Q8WWM9	190 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	FAM3C	Q92520	227 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	TADA1	Q96BN2	335 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	SFRP2	Q96HF1	295 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	CELF6	Q96J87	481 aa	Known RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	SMIM8	Q96KF7	97 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	FCRL1	Q96LA6	429 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ERMAP	Q96PL5	475 aa	Predicted RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	RBP7	Q96R05	134 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	ZNF382	Q96SR6	550 aa		2.58	□□□□□ -2
USP28-210	ENST00000542033	HOPX	Q9BPY8	73 aa	Predicted RBP	2.58	□□□□□ -2
USP28-210	ENST00000542033	CMSS1	Q9BQ75	279 aa	Known RBP	2.58	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms