RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 HTR3BO95264 441 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF735P0CB33 412 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 ANXA3P12429 323 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 HIST1H1DP16402 221 aaKnown RBP12.58□□□□□ -0.4
CLIP1-216ENST00000541410 BLVRBP30043 206 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-216ENST00000541410 CDK10Q15131 360 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 Q6ZSR3 168 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 BHLHE23Q8NDY6 225 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 OR11H4Q8NGC9 324 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 CST11Q9H112 138 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 POFUT1Q9H488 388 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 TRAV17A0A0B4J275 112 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF850A8MQ14 1090 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF891A8MT65 544 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-216ENST00000541410 SIX6O95475 246 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 NAT2P11245 290 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 HOXD11P31277 338 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-216ENST00000541410 RPS27AP62979 156 aaKnown RBP12.58□□□□□ -0.4
CLIP1-216ENST00000541410 CXADRP78310 365 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 ARFRP1Q13795 201 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 PDCD1Q15116 288 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 NKAPLQ5M9Q1 402 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 PLCXD3Q63HM9 321 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 BORCS8Q96FH0 119 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 TAAR6Q96RI8 345 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 URM1Q9BTM9 101 aaKnown RBP12.58□□□□□ -0.4
CLIP1-216ENST00000541410 RNF122Q9H9V4 155 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 MGAT4CQ9UBM8 478 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 FBLN5Q9UBX5 448 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 GPR160Q9UJ42 338 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 HSPB11Q9Y547 144 aa12.58□□□□□ -0.4
CLIP1-216ENST00000541410 K7EM74 188 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 SSBP1Q04837 148 aaKnown RBP12.57□□□□□ -0.4
CLIP1-216ENST00000541410 GK2Q14410 553 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-216ENST00000541410 C2orf68Q2NKX9 166 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 C4orf46Q504U0 113 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 RNASE10Q5GAN6 216 aaKnown RBP12.57□□□□□ -0.4
CLIP1-216ENST00000541410 FBXW9Q5XUX1 488 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 LAMTOR1Q6IAA8 161 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 BRICD5Q6PL45 260 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 IGFL2Q6UWQ7 119 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 NCCRP1Q6ZVX7 275 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-216ENST00000541410 SLC36A1Q7Z2H8 476 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 C6orf201Q7Z4U5 140 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 CDH26Q8IXH8 852 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 SLC7A5P1Q8MH63 180 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 CNEP1R1Q8N9A8 125 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 OR56B2PQ8NGI1 322 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 SNAPC3Q92966 411 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 ST6GALNAC5Q9BVH7 336 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 C1QTNF5Q9BXJ0 243 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 PTTG3PQ9NZH4 202 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 CREBL2O60519 120 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-216ENST00000541410 PRAF2O60831 178 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 LYZL6O75951 148 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 CHRM2P08172 466 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 MELTFP08582 738 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 TAF9Q16594 264 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 CLVS2Q5SYC1 327 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF626Q68DY1 528 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 IGF2-ASQ6U949 168 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 MUC20Q8N307 709 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-216ENST00000541410 OR56B1Q8NGI3 324 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 OR13C8Q8NGS7 320 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 NPDC1Q9NQX5 325 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-216ENST00000541410 STARD10Q9Y365 291 aa12.57□□□□□ -0.4
CLIP1-216ENST00000541410 TSC22D2O75157 780 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 PDGFAP04085 211 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 CD74P04233 296 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 ERP29P30040 261 aaKnown RBP12.56□□□□□ -0.4
CLIP1-216ENST00000541410 RTP5Q14D33 572 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 RSU1Q15404 277 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 IGFBP7Q16270 282 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 NRN1LQ496H8 165 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 NLRC3Q7RTR2 1065 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 MYPOPQ86VE0 399 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-216ENST00000541410 C10orf35Q96D05 121 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 HDHD3Q9BSH5 251 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-216ENST00000541410 PAPOLGQ9BWT3 736 aaKnown RBP12.56□□□□□ -0.4
CLIP1-216ENST00000541410 C1QTNF6Q9BXI9 259 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF436Q9C0F3 470 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-216ENST00000541410 DLL4Q9NR61 685 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 MGAT4AQ9UM21 535 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 PIEZO2Q9H5I5 2752 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 ANKRD11Q6UB99 2663 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-216ENST00000541410 MEIKINA0A087WXM9 373 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 IGKV1-12A0A0C4DH73 117 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 TMEM82A0PJX8 343 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 FAM172BPA6NC97 362 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 OR6C65A6NJZ3 312 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 MFNGO00587 321 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 IGKV1D-12P01611 117 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 CELA3BP08861 270 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 UBBP0CG47 229 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 RBP2P50120 134 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 CNN3Q15417 329 aaKnown RBP12.56□□□□□ -0.4
CLIP1-216ENST00000541410 SPATA46Q5T0L3 261 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 CALHM1Q8IU99 346 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 OR1K1Q8NGR3 316 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 OR2T35Q8NGX2 323 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms