RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PUS1Q9Y606 427 aaKnown RBP eCLIP9.93□□□□□ -0.82
SYNE1-237ENST00000539504 VCANP13611 3396 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 A0A1W2PPE2 198 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 RHPN2P1A8MT19 583 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 F5H5K5 113 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 LYL1P12980 280 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 GUCA1AP43080 201 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-237ENST00000539504 FXYD4P59646 89 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 HSD11B2P80365 405 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 PCK2Q16822 640 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 GGNBP1Q5YKI7 109 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 KIAA0895LQ68EN5 471 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 C1QL2Q7Z5L3 287 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 ERGIC1Q969X5 290 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 PLEKHJ1Q9NW61 149 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 LUZP4Q9P127 313 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF319Q9P2F9 582 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 C2orf16Q68DN1 1984 aa9.93□□□□□ -0.82
SYNE1-237ENST00000539504 FCGR2AP12318 317 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 FOLR2P14207 255 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 RAB5AP20339 215 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 ABCA11PQ4W5N1 156 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 NCMAPQ5T1S8 102 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 C7orf61Q8IZ16 206 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 LINC00469Q8N7U9 141 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 PIGTQ969N2 578 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 CHRDQ9H2X0 955 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 PLA2G2EQ9NZK7 142 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 LHFPL6Q9Y693 200 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 A0A1W2PNR3 127 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 IGHG1P01857 330 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 GABRA4P48169 554 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 KISS1Q15726 138 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 TMEM268Q5VZI3 342 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 C6orf201Q7Z4U5 140 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 PPP1R3BQ86XI6 285 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 ZDHHC12Q96GR4 267 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 NUDT16L1Q9BRJ7 211 aaKnown RBP9.92□□□□□ -0.82
SYNE1-237ENST00000539504 RNF122Q9H9V4 155 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 SDHAF3Q9NRP4 125 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 TIMM10BQ9Y5J6 103 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 POMT1Q9Y6A1 747 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 SPAG17Q6Q759 2223 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF850A8MQ14 1090 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 UBE2CO00762 179 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 HPNP05981 417 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 TMEM225BP0DP42 221 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 S100PP25815 95 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 MRPS21P82921 87 aaKnown RBP9.92□□□□□ -0.82
SYNE1-237ENST00000539504 OR5B2Q96R09 309 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 HDHD3Q9BSH5 251 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-237ENST00000539504 VN1R1Q9GZP7 353 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 FBLN5Q9UBX5 448 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 KCNIP3Q9Y2W7 256 aa9.92□□□□□ -0.82
SYNE1-237ENST00000539504 IGKV3D-11A0A0A0MRZ8 115 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF726A6NNF4 738 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 DRD1P21728 446 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 ACKR3P25106 362 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 SFTPDP35247 375 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 APOBEC1P41238 236 aaKnown RBP9.91□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF41P51814 821 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-237ENST00000539504 EFNA3P52797 238 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 C17orf67Q0P5P2 114 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 RPUSD3Q6P087 351 aaKnown RBP9.91□□□□□ -0.82
SYNE1-237ENST00000539504 LHFPL1Q86WI0 220 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 C1orf147Q96MC9 270 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-237ENST00000539504 PECRQ9BY49 303 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 RANBP2P49792 3224 aaKnown RBP9.91□□□□□ -0.82
SYNE1-237ENST00000539504 PMS2P1A4D2B8 440 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 OPRM1P35372 400 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 RPS10P46783 165 aaKnown RBP9.91□□□□□ -0.82
SYNE1-237ENST00000539504 ASCL1P50553 236 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 SPEM2Q0P670 501 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 ZP4Q12836 540 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 RNF212Q495C1 297 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 THEM4Q5T1C6 240 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 DOK3Q7L591 496 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 FAM213BQ8TBF2 198 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 ST8SIA1Q92185 356 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 BSCL2Q96G97 398 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-237ENST00000539504 MOB1AQ9H8S9 216 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 PADI1Q9ULC6 663 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 B3GALT1Q9Y5Z6 326 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 DEDDO75618 318 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 NME1P15531 152 aaKnown RBP9.91□□□□□ -0.82
SYNE1-237ENST00000539504 SULT1A1P50225 295 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 OGFOD3Q6PK18 319 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 GKN2Q86XP6 184 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 PPP4R1LQ9P1A2 415 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 ASXL3Q9C0F0 2248 aa9.91□□□□□ -0.82
SYNE1-237ENST00000539504 IGKV1D-8A0A087WSZ0 117 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 ANKUB1A6NFN9 424 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 LIPT2A6NK58 231 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 EIF1BO60739 113 aaKnown RBP9.9□□□□□ -0.82
SYNE1-237ENST00000539504 RPS2P15880 293 aaKnown RBP9.9□□□□□ -0.82
SYNE1-237ENST00000539504 FAHP16930 419 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 ANOS1P23352 680 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 SNCAP37840 140 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 EIF1P41567 113 aaKnown RBP9.9□□□□□ -0.82
SYNE1-237ENST00000539504 RNF4P78317 190 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms