RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 GRHL3Q8TE85 626 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 TNFRSF14Q92956 283 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 POP5Q969H6 163 aaKnown RBP3.3□□□□□ -1.88
MCF2-210ENST00000536274 FAM46BQ96A09 425 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 CLDN23Q96B33 292 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 SMIM19Q96E16 107 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 SAT2Q96F10 170 aaPredicted RBP3.3□□□□□ -1.88
MCF2-210ENST00000536274 PHB2Q99623 299 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 KLHDC3Q9BQ90 382 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 CST9LQ9H4G1 147 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 PDE7BQ9NP56 450 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 PARP11Q9NR21 331 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 MARCH5Q9NX47 278 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 OR6C3Q9NZP0 311 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 PITPNC1Q9UKF7 332 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 SLC7A11Q9UPY5 501 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 CORO2BQ9UQ03 480 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 LAMP3Q9UQV4 416 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 SIGLEC7Q9Y286 467 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 TRANK1O15050 2925 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 DOCK11Q5JSL3 2073 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 KIAA2026Q5HYC2 2103 aa3.3□□□□□ -1.88
MCF2-210ENST00000536274 A0A1B0GU03 582 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 A0A1W2PP55 124 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 A0A1W2PR48 441 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 IRGMA1A4Y4 181 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 A8MVM7 634 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 NPIPA2E9PIF3 369 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 K7EP13 123 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 K7ERQ8 282 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 RAB27BO00194 218 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 KDELR3O43731 214 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 APODP05090 189 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 CTSDP07339 412 aaPredicted RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 CHRM2P08172 466 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 KCNE1P15382 129 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 CR2P20023 1033 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 PPIBP23284 216 aaKnown RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 SERPINA4P29622 427 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 HOXA11P31270 313 aaPredicted RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 APOBEC1P41238 236 aaKnown RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 EFNA3P52797 238 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 RND3P61587 244 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 UBE2V1Q13404 147 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 NFATC2Q13469 925 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.29□□□□□ -1.88
MCF2-210ENST00000536274 ANKRD55Q3KP44 614 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 C2orf76Q3KRA6 126 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 FBLN7Q53RD9 439 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 RIPPLY2Q5TAB7 128 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 ABLIM2Q6H8Q1 611 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 FIGLAQ6QHK4 219 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 DPPA3Q6W0C5 159 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 DCXRQ7Z4W1 244 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 ATG4DQ86TL0 474 aaPredicted RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 ACOT4Q8N9L9 421 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 STXBP6Q8NFX7 210 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 OR5L1Q8NGL2 311 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 OR6N2Q8NGY6 317 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 OR2L2Q8NH16 312 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 ZNF596Q8TC21 504 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 GPR119Q8TDV5 335 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 TMEM40Q8WWA1 233 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 KCTD13Q8WZ19 329 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 REEP6Q96HR9 211 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 CD180Q99467 661 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 SLC17A9Q9BYT1 436 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 DPEP2Q9H4A9 486 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 AURKAIP1Q9NWT8 199 aaPredicted RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 CRLS1Q9UJA2 301 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 TMED3Q9Y3Q3 217 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 SNRNP200O75643 2136 aaKnown RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 YLPM1P49750 1951 aaKnown RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 A0A1W2PN81 502 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 LNP1A1A4G5 178 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 WIPF3A6NGB9 483 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 ARL5CA6NH57 179 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 OR2AG2A6NM03 316 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 B4DGG1 531 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 ZNF736B4DX44 427 aaPredicted RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 H7BY64 318 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 NDUFS8O00217 210 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 GCGP01275 180 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 CSTBP04080 98 aaKnown RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 HRH1P35367 487 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 CHRNA7P36544 502 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 ARR3P36575 388 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 VIPR2P41587 438 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 RGS8P57771 180 aaPredicted RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 RPS24P62847 133 aaKnown RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 ADAM8P78325 824 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 REEP5Q00765 189 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 NAAAQ02083 359 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 LASP1Q14847 261 aaKnown RBP3.29□□□□□ -1.88
MCF2-210ENST00000536274 VAMP3Q15836 100 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 IQCJQ1A5X6 159 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 DCAF4L1Q3SXM0 396 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 LCE2CQ5TA81 110 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 ASPHD2Q6ICH7 369 aa3.29□□□□□ -1.88
MCF2-210ENST00000536274 GRHL2Q6ISB3 625 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms