RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MRPL48Q96GC5 212 aaKnown RBP12.62□□□□□ -0.39
CPSF1-208ENST00000532560 MICU1Q9BPX6 476 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 RTL8AQ9BWD3 113 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 TLNRD1Q9H1K6 362 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 PPP1R3EQ9H7J1 279 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 PATZ1Q9HBE1 687 aaKnown RBP12.62□□□□□ -0.39
CPSF1-208ENST00000532560 INPP5EQ9NRR6 644 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 RNF7Q9UBF6 113 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 PCDHB10Q9UN67 800 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 SLC22A13Q9Y226 551 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 ANK3Q12955 4377 aaKnown RBP12.61□□□□□ -0.39
CPSF1-208ENST00000532560 PPIAL4EA0A075B759 164 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 A0A1B0GTI1 187 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 A6NLC8 198 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 TMEM210A6NLX4 147 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 CEACAM18A8MTB9 384 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 PPIAL4DF5H284 164 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 GRPP07492 148 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 PPIAL4FP0DN26 164 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 ZNF154Q13106 437 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 NEDD8Q15843 81 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 CHRFAM7AQ494W8 412 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 ZNF404Q494X3 552 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 TP53I3Q53FA7 332 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 WDR38Q5JTN6 314 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 XAF1Q6GPH4 301 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 DOK3Q7L591 496 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 EGFL6Q8IUX8 553 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 PIGCQ92535 297 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 BORCS5Q969J3 196 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 RNF166Q96A37 237 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-208ENST00000532560 SHARPINQ9H0F6 387 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 DUSP21Q9H596 190 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 LPAR2Q9HBW0 351 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 TMEM165Q9HC07 324 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 AMBNQ9NP70 447 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 HIF1ANQ9NWT6 349 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 C1orf123Q9NWV4 160 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 ENPP5Q9UJA9 477 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 PIGLQ9Y2B2 252 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 PPIAL4AQ9Y536 164 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 V9GYS6 101 aa12.61□□□□□ -0.39
CPSF1-208ENST00000532560 hCG_1807616A0A1W2PRN6 198 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 A8MXK9 166 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 P2RY10O00398 339 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 ZNF205O95201 554 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 FAHP16930 419 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 HNF1AP20823 631 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 THBS2P35442 1172 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 OR12D2P58182 307 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 GALEQ14376 348 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 SMN1Q16637 294 aaKnown RBP12.6□□□□□ -0.39
CPSF1-208ENST00000532560 CR1LQ2VPA4 569 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 KLHL22Q53GT1 634 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 FAM76BQ5HYJ3 339 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 FAM201AQ5SY85 155 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 FAM120AOSQ5T036 256 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 TMEM42Q69YG0 159 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 FDX2Q6P4F2 183 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 ZNF826PQ6ZT77 177 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 ANKRD13BQ86YJ7 626 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 C11orf53Q8IXP5 236 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 PRSS35Q8N3Z0 413 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 CCDC54Q8NEL0 328 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 OR14K1Q8NGZ2 314 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 CNIH3Q8TBE1 160 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 TMEM246Q9BRR3 403 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 JAM3Q9BX67 310 aa12.6□□□□□ -0.39
CPSF1-208ENST00000532560 FGF23Q9GZV9 251 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-208ENST00000532560 A0A1B0GVI7 797 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 LGALS8O00214 317 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 PLPP2O43688 288 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 FOXH1O75593 365 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 LHBP01229 141 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 UBCP0CG48 685 aaKnown RBP12.59□□□□□ -0.39
CPSF1-208ENST00000532560 CFHR2P36980 270 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 PSMB10P40306 273 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 KIR3DL2P43630 455 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 KCNJ8Q15842 424 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 CEACAM21Q3KPI0 293 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 WDR82Q6UXN9 313 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 DCDC5Q6ZRR9 648 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 SYS1Q8N2H4 156 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 GCSAMQ8N6F7 178 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 OR52I1Q8NGK6 324 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 OR2G2Q8NGZ5 317 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 FCGR1BQ92637 280 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 C4orf36Q96KX1 117 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 HIST1H2AAQ96QV6 131 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 ZNF649Q9BS31 505 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 ALG8Q9BVK2 526 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 BEX2Q9BXY8 128 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 TRIM36Q9NQ86 728 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 ERVK13-1Q9NX77 482 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 MIOXQ9UGB7 285 aa12.59□□□□□ -0.39
CPSF1-208ENST00000532560 POLR3KQ9Y2Y1 108 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-208ENST00000532560 PPIAL4CA0A0B4J2A2 164 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 LOC107986453A0A1B0GWG9 222 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 IRGMA1A4Y4 181 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 OR5B21A6NL26 309 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms