RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 FCN3O75636 299 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 GLRA1P23415 457 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 ACKR3P25106 362 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 GPM6AP51674 278 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 SLC35D3Q5M8T2 416 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 NCR3LG1Q68D85 454 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 KCTD18Q6PI47 426 aaPredicted RBP12.12□□□□□ -0.47
VPS28-215ENST00000531924 ADGRG5Q8IZF4 528 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 OR8B12Q8NGG6 310 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 ZNF671Q8TAW3 534 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 CLPTM1LQ96KA5 538 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 CITED1Q99966 193 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 TCF7L1Q9HCS4 588 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 TAS2R1Q9NYW7 299 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 NLKQ9UBE8 527 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 TMEM269A0A1B0GVZ9 245 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 ANKRD61A6NGH8 418 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 AQP12BA6NM10 295 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 OR2AT4A6NND4 320 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 ANXA8P13928 327 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 CAPZA1P52907 286 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 GNG3P63215 75 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 PRB3Q04118 309 aaPredicted RBP12.11□□□□□ -0.47
VPS28-215ENST00000531924 PDLIM3Q53GG5 364 aaPredicted RBP12.11□□□□□ -0.47
VPS28-215ENST00000531924 METAP1DQ6UB28 335 aaPredicted RBP12.11□□□□□ -0.47
VPS28-215ENST00000531924 SPATA24Q86W54 205 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 AQP12AQ8IXF9 295 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 LINC01006Q8NI28 216 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 CANT1Q8WVQ1 401 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 MROQ9BYG7 248 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 SEMA6AQ9H2E6 1030 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 MMP27Q9H306 513 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 METTL8Q9H825 291 aaKnown RBP12.11□□□□□ -0.47
VPS28-215ENST00000531924 VPREB3Q9UKI3 123 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 KLHDC2Q9Y2U9 406 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 LRP12Q9Y561 859 aa12.11□□□□□ -0.47
VPS28-215ENST00000531924 ACOD1A6NK06 481 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 ZNF732B4DXR9 585 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 H0YAE9 185 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 RNASEK-C17orf49H0YIS7 233 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 M0R1W7 72 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 FAM107AO95990 144 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 ACAA1P09110 424 aaPredicted RBP12.1□□□□□ -0.47
VPS28-215ENST00000531924 SELLP14151 372 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 CDK5Q00535 292 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 APOFQ13790 326 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 SNAPC1Q16533 368 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 TAF9Q16594 264 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 DGUOKQ16854 277 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 CEP78Q5JTW2 689 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 LCN1P1Q5VSP4 162 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 ZNF788Q6ZQV5 615 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 C1orf122Q6ZSJ8 110 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 MOB3CQ70IA8 216 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 TMEM179BQ7Z7N9 219 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 TMEM185AQ8NFB2 350 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 OR5R1Q8NH85 324 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 ANGPTL6Q8NI99 470 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 C8orf46Q8TAG6 207 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 DUS3LQ96G46 650 aaKnown RBP12.1□□□□□ -0.47
VPS28-215ENST00000531924 LYZL4Q96KX0 146 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 GAFA1Q96PS6 74 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 YIPF3Q9GZM5 350 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 TMEM14AQ9Y6G1 99 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 TRRAPQ9Y4A5 3859 aa12.1□□□□□ -0.47
VPS28-215ENST00000531924 PSMD9O00233 223 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 SIGLEC5O15389 551 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 TFF1P04155 84 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 MRPL3P09001 348 aaKnown RBP12.09□□□□□ -0.47
VPS28-215ENST00000531924 T-ENOLP0DO92 83 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 ATP6V1B1P15313 513 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 AMY2BP19961 511 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 ALOX5APP20292 161 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 PRKACGP22612 351 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 SAA4P35542 130 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 TGFBR2P37173 567 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 UBE2E1P51965 193 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 HCCSP53701 268 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 CAV3P56539 151 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 RIPPLY1Q0D2K3 151 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 KLRD1Q13241 179 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 OCLNQ16625 522 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 ZNF829Q3KNS6 432 aaPredicted RBP12.09□□□□□ -0.47
VPS28-215ENST00000531924 CEACAM21Q3KPI0 293 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 FAM76BQ5HYJ3 339 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 TMEM236Q5W0B7 351 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 PLCXD3Q63HM9 321 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 DEGS2Q6QHC5 323 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 HS3ST5Q8IZT8 346 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 FAM185AQ8N0U4 392 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 ZSCAN4Q8NAM6 433 aaPredicted RBP12.09□□□□□ -0.47
VPS28-215ENST00000531924 BBS1Q8NFJ9 593 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 OR5D13Q8NGL4 314 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 HPSE2Q8WWQ2 592 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 ITFG2Q969R8 447 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 FAM234AQ9H0X4 552 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 C1orf21Q9H246 121 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 TVP23BQ9NYZ1 205 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 ZNRD1Q9P1U0 126 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 DNAJB9Q9UBS3 223 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms