RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 CBX1P83916 185 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 PRB3Q04118 309 aaPredicted RBP9.3□□□□□ -0.92
VPS28-214ENST00000531032 PRDX4Q13162 271 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 KLRD1Q13241 179 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 ZNF788Q6ZQV5 615 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 C1orf122Q6ZSJ8 110 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 IQCF1Q8N6M8 205 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 OR5T2Q8NGG2 359 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 OR5R1Q8NH85 324 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 OTOSQ8NHW6 89 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 ANGPTL6Q8NI99 470 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 HPSE2Q8WWQ2 592 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 RPL3LQ92901 407 aaKnown RBP9.3□□□□□ -0.92
VPS28-214ENST00000531032 UBE2FQ969M7 185 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 MED30Q96HR3 178 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 GAFA1Q96PS6 74 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 FEVQ99581 238 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 PKP2Q99959 881 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 FGF23Q9GZV9 251 aaPredicted RBP9.3□□□□□ -0.92
VPS28-214ENST00000531032 BRD7Q9NPI1 651 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 SLC25A10Q9UBX3 287 aaPredicted RBP9.3□□□□□ -0.92
VPS28-214ENST00000531032 ZNF391Q9UJN7 358 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 PRKDCP78527 4128 aaKnown RBP9.3□□□□□ -0.92
VPS28-214ENST00000531032 ZNF850A8MQ14 1090 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 M0R1W7 72 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 SIGLEC5O15389 551 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 FKBP6O75344 327 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 TSPAN15O95858 294 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 LYNP07948 512 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 SAA4P35542 130 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 TGFBR2P37173 567 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 RASSF2P50749 326 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 UBE2E1P51965 193 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 CAV3P56539 151 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 PSMA6P60900 246 aaKnown RBP9.29□□□□□ -0.92
VPS28-214ENST00000531032 GMFBP60983 142 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 DGUOKQ16854 277 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 NCR3LG1Q68D85 454 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 KRT74Q7RTS7 529 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 ZNF454Q8N9F8 522 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 H1FXQ92522 213 aaKnown RBP9.29□□□□□ -0.92
VPS28-214ENST00000531032 LYZL4Q96KX0 146 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 OR51V1Q9H2C8 321 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 METTL8Q9H825 291 aaKnown RBP9.29□□□□□ -0.92
VPS28-214ENST00000531032 SNTG1Q9NSN8 517 aa9.29□□□□□ -0.92
VPS28-214ENST00000531032 ZNF816-ZNF321PA0A0X1KG74 233 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 A0A1W2PRD5 423 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 A0A1W2PRF3 423 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 A0A1W2PRM7 423 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 MEIOCA2RUB1 952 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 PRR23D1E9PI22 279 aaPredicted RBP9.28□□□□□ -0.92
VPS28-214ENST00000531032 AKR7A2O43488 359 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 SELENOFO60613 162 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 PAHP00439 452 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 TFF1P04155 84 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 ACAA1P09110 424 aaPredicted RBP9.28□□□□□ -0.92
VPS28-214ENST00000531032 PRR23D2P0DMB1 279 aaPredicted RBP9.28□□□□□ -0.92
VPS28-214ENST00000531032 RPS7P62081 194 aaKnown RBP9.28□□□□□ -0.92
VPS28-214ENST00000531032 EGR3Q06889 387 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 ACSM1Q08AH1 577 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 C2orf68Q2NKX9 166 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 KCTD8Q6ZWB6 473 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.28□□□□□ -0.92
VPS28-214ENST00000531032 ZDHHC23Q8IYP9 409 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 PNKDQ8N490 385 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 OR8B12Q8NGG6 310 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 PIGCQ92535 297 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 SLC7A6OSQ96CW6 309 aaPredicted RBP9.28□□□□□ -0.92
VPS28-214ENST00000531032 RNF170Q96K19 258 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 NIPAL2Q9H841 368 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 NLKQ9UBE8 527 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 DNAJB9Q9UBS3 223 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 POMPQ9Y244 141 aa9.28□□□□□ -0.92
VPS28-214ENST00000531032 IGKV1D-17A0A075B6S4 117 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 TCRBV3S1A0A5B6 114 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 OR2AT4A6NND4 320 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 PRODHO43272 600 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 RHBDL1O75783 438 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 HMGN1P05114 100 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 OSMP13725 252 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 ANXA8P13928 327 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 NDUFB7P17568 137 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 GPM6AP51674 278 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 GINS1Q14691 196 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 HCP5Q6MZN7 132 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 PLBD1Q6P4A8 553 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 HS3ST5Q8IZT8 346 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 PAPD5Q8NDF8 572 aaKnown RBP9.27□□□□□ -0.93
VPS28-214ENST00000531032 BEND2Q8NDZ0 799 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 THEM6Q8WUY1 208 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 ITFG2Q969R8 447 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 DUS3LQ96G46 650 aaKnown RBP9.27□□□□□ -0.93
VPS28-214ENST00000531032 OR51I2Q9H344 312 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 FBLN5Q9UBX5 448 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 ZNF222Q9UK12 451 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 KLHDC2Q9Y2U9 406 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 LRP12Q9Y561 859 aa9.27□□□□□ -0.93
VPS28-214ENST00000531032 TET2Q6N021 2002 aaPredicted RBP9.26□□□□□ -0.93
VPS28-214ENST00000531032 TRBV23-1A0A0A0MS06 115 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 A0A0U1RQV5 110 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms