RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 BBIP1A8MTZ0 92 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 ZNF99A8MXY4 864 aaPredicted RBP5.28□□□□□ -1.56
LSM1-202ENST00000520286 LOC730098B7Z3J9 87 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 F8VP50 259 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 MRPS14O60783 128 aaKnown RBP5.28□□□□□ -1.56
LSM1-202ENST00000520286 EEDO75530 441 aaKnown RBP5.28□□□□□ -1.56
LSM1-202ENST00000520286 KRT7P08729 469 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 MLNP12872 115 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 ICAM2P13598 275 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 GFAPP14136 432 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 GSTM3P21266 225 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 ELK4P28324 431 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 CBX5P45973 191 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 DEFB103AP81534 67 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 SIGLEC14Q08ET2 396 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 SMARCB1Q12824 385 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 ZNF239Q16600 458 aaKnown RBP5.28□□□□□ -1.56
LSM1-202ENST00000520286 VAX1Q5SQQ9 334 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 LAIR2Q6ISS4 152 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 PRMT9Q6P2P2 845 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 HDDC2Q7Z4H3 204 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 HORMAD1Q86X24 394 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 PLCZ1Q86YW0 608 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 TGIF2LYQ8IUE0 185 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 NDNFQ8TB73 568 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 ZFAND1Q8TCF1 268 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 PRRC1Q96M27 445 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 DNTTIP1Q9H147 329 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 CCNB1IP1Q9NPC3 277 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 PLSCR3Q9NRY6 295 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 IL37Q9NZH6 218 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 ADA2Q9NZK5 511 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 XCL2Q9UBD3 114 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 OPTCQ9UBM4 332 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 ATPIF1Q9UII2 106 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 TRAPPC4Q9Y296 219 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 NEUROG3Q9Y4Z2 214 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 MMP24Q9Y5R2 645 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 GOLGA8IPA6NC78 632 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 CLDN24A6NM45 220 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 TRPC5OSA6NMA1 111 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 A8MUA0 341 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 LEUTXA8MZ59 168 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 M0R3G1 203 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 UPK1AO00322 258 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 NME4O00746 187 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 MRASO14807 208 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 MRPS12O15235 138 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 AKR7A2O43488 359 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 HUS1O60921 280 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 SRSF10O75494 262 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 SNAP29O95721 258 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 ALDOBP05062 364 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 CHTF8P0CG12 524 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 IL7P13232 177 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 ZNF30P17039 623 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 PRKACAP17612 351 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 CD1BP29016 333 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 TGFBR2P37173 567 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 HTR2BP41595 481 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 CX3CR1P49238 355 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 OR2B6P58173 313 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 MRPS15P82914 257 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 PAX5Q02548 391 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 ZNF92Q03936 586 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 CYP24A1Q07973 514 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 ECH1Q13011 328 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 PSMD5Q16401 504 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 SNRNP35Q16560 246 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 HADHQ16836 314 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 LCE1FQ5T754 118 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 SYT6Q5T7P8 510 aaPredicted RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 PIP5KL1Q5T9C9 394 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 TMEM236Q5W0B7 351 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 DNAJC24Q6P3W2 148 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 RNF165Q6ZSG1 346 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 TMEM135Q86UB9 458 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 THOC6Q86W42 341 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 MICU2Q8IYU8 434 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 TCTE3Q8IZS6 198 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 ZADH2Q8N4Q0 377 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 HSD17B11Q8NBQ5 300 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 OR4M1Q8NGD0 313 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 PPWD1Q96BP3 646 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 C8orf44Q96CB5 159 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 AURKBQ96GD4 344 aaPredicted RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 DEFB127Q9H1M4 99 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 ELOVL6Q9H5J4 265 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 MRPS30Q9NP92 439 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 USE1Q9NZ43 259 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 CCDC59Q9P031 241 aaKnown RBP5.27□□□□□ -1.57
LSM1-202ENST00000520286 ZNF236Q9UL36 1845 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 REV3LO60673 3130 aa5.27□□□□□ -1.57
LSM1-202ENST00000520286 PTPRZ1P23471 2315 aaPredicted RBP5.26□□□□□ -1.57
LSM1-202ENST00000520286 MYO9BQ13459 2157 aa5.26□□□□□ -1.57
LSM1-202ENST00000520286 TRBV9A0A0B4J1U6 114 aa5.26□□□□□ -1.57
LSM1-202ENST00000520286 PDZK1P1A8MUH7 402 aa5.26□□□□□ -1.57
LSM1-202ENST00000520286 FXYD1O00168 92 aa5.26□□□□□ -1.57
LSM1-202ENST00000520286 LYPLA2O95372 231 aa5.26□□□□□ -1.57
LSM1-202ENST00000520286 BCKDHBP21953 392 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms