RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DRD1P21728 446 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC25A1P53007 311 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 CTSCP53634 463 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 NKAIN1Q4KMZ8 207 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 CTU1Q7Z7A3 348 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 NKAIN4Q8IVV8 208 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 CNEP1R1Q8N9A8 125 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 SPATA6Q9NWH7 488 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 EFSO43281 561 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 ACTL6AO96019 429 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 CTSDP07339 412 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 RRADP55042 308 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 RAB32Q13637 225 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 EDDM3AQ14507 147 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 GABRA6Q16445 453 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 ZNF766Q5HY98 468 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 PBOV1Q9GZY1 135 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 PRSS37A4D1T9 235 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 HEPACAM2A8MVW5 462 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 RER1O15258 196 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 P2RY2P41231 377 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 RPS16P62249 146 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 TWIST1Q15672 202 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 ADIPOQQ15848 244 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 CBLN2Q8IUK8 224 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 OR1L6Q8NGR2 347 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 OR10X1Q8NGY0 326 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 VN1R17PQ8TDU5 208 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 FGF14Q92915 247 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 FAM131CQ96AQ9 280 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 GRAMD2BQ96HH9 432 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 OR51B6Q9H340 312 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 FUT9Q9Y231 359 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 PRSS21Q9Y6M0 314 aa10.13□□□□□ -0.79
LIMCH1-217ENST00000512946 SUMO3P55854 103 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 RPL30P62888 115 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 TMEM65Q6PI78 240 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC25A34Q6PIV7 304 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 ZDHHC23Q8IYP9 409 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 H1FXQ92522 213 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 OR2D2Q9H210 308 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 DUOX1Q9NRD9 1551 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 H3BQ15 152 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 NPY1RP25929 384 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 OPRM1P35372 400 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 OR1D5P58170 312 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 SAPCD1Q5SSQ6 148 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 VASH2Q86V25 355 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 ETFBKMTQ8IXQ9 262 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 ADAT3Q96EY9 351 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 MOGAT1Q96PD6 335 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 SDF2Q99470 211 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 MBNL1Q9NR56 388 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 TMEM30CPA0ZSE6 113 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 APCSP02743 223 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 IRS1P35568 1242 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 TMEM33P57088 247 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 PPP1R1AQ13522 171 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 ZNF385CQ66K41 422 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 TCTN3Q6NUS6 607 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 TP53INP2Q8IXH6 220 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 TMEM183AQ8IXX5 376 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 OIT3Q8WWZ8 545 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 PECRQ9BY49 303 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 ALX4Q9H161 411 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 CLDND1Q9NY35 253 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 ZDHHC8Q9ULC8 765 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 ST3GAL6Q9Y274 331 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 HS3ST1O14792 307 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 ARG1P05089 322 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 SP1P08047 785 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 HIST1H1DP16402 221 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 PI3P19957 117 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 CSNK1EP49674 416 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 LBX1P52954 281 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 TCL1AP56279 114 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 TAS2R60P59551 318 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 SMIM21Q3B7S5 101 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 HES3Q5TGS1 186 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 SCCPDHQ8NBX0 429 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 SAP30LQ9HAJ7 183 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 NTNG1Q9Y2I2 539 aa10.12□□□□□ -0.79
LIMCH1-217ENST00000512946 CDS2O95674 445 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 CDX1P47902 265 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 ELAVL1Q15717 326 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 FAAP20Q6NZ36 180 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 ADAMTSL4Q6UY14 1074 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 SCD5Q86SK9 330 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 D2HGDHQ8N465 521 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 C5orf17Q8NAS9 161 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 TMEM178AQ8NBL3 297 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 DDA1Q9BW61 102 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 P4HTMQ9NXG6 502 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 M0R3E3 92 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 CYB5R3P00387 301 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 ZNF250P15622 560 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 NPBWR2P48146 333 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 CEBPDP49716 269 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 PPP2CBP62714 309 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 PAQR6Q6TCH4 344 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms