RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 OR51B5Q9H339 312 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 TMEM100Q9NV29 134 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 FLVCR2Q9UPI3 526 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 COL1A2P08123 1366 aa2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 ZNF608Q9ULD9 1512 aaPredicted RBP2.22□□□□□ -2.05
HMGB1P28-201ENST00000507778 IGKV1D-17A0A075B6S4 117 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 TRAV8-4A0A0B4J246 113 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 IGHV2OR16-5A0A0B4J2B6 119 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 A0A0J9YYE9 177 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 ISPDA4D126 451 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 ZNF98A6NK75 572 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 TRAPPC6AO75865 159 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 SMC2O95347 1197 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 IGKV1-17P01599 117 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 P01737 135 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 TRBC1P01850 177 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 STAG3L2P0CL84 134 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 HCCSP53701 268 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 SLC35B1P78383 322 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 STK38Q15208 465 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 LUZP6Q538Z0 58 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 KLHL12Q53G59 568 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 CPTPQ5TA50 214 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 OR2Z1Q8NG97 314 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 OR52K1Q8NGK4 314 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 OR5M1Q8NGP8 315 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 SFXN5Q8TD22 340 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 S100PBPQ96BU1 408 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 WDR34Q96EX3 536 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 FRMD8P1Q9BZ68 369 aaPredicted RBP2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 PLEKHF2Q9H8W4 249 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 TAS2R5Q9NYW4 299 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 VAX2Q9UIW0 290 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 WIF1Q9Y5W5 379 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 JCADQ9P266 1359 aa2.21□□□□□ -2.06
HMGB1P28-201ENST00000507778 TRAV8-6A0A0B4J262 113 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 CEACAM18A8MTB9 384 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 A8MWL6 223 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 H7C2Y5 167 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 PLEKHA8P1O95397 391 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 LHBP01229 141 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 MAS1P04201 325 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 CD5P06127 495 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 MMP7P09237 267 aaPredicted RBP2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 NELFEP18615 380 aaKnown RBP2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 NTF3P20783 257 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 CPN2P22792 545 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 IL3RAP26951 378 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 PRSS3P35030 304 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 TAS2R60P59551 318 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 PRSS54Q6PEW0 395 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 DEGS2Q6QHC5 323 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 ORMDL3Q8N138 153 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 STK40Q8N2I9 435 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 SLC25A29Q8N8R3 303 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 ZNF721Q8TF20 911 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 FAM131CQ96AQ9 280 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 TSNAXQ99598 290 aaKnown RBP2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 RHOXF2Q9BQY4 288 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 STMN4Q9H169 189 aaPredicted RBP2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 GAL3ST2Q9H3Q3 398 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 C6orf50Q9HD87 102 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 PPIL1Q9Y3C6 166 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 KLF12Q9Y4X4 402 aa2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 AQRO60306 1485 aaKnown RBP eCLIP2.2□□□□□ -2.06
HMGB1P28-201ENST00000507778 IGHV3OR16-8A0A075B7F1 116 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 KDELR3O43731 214 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 OR7C2O60412 319 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 GNRHRP30968 328 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 MPV17P39210 176 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 ELF3P78545 371 aaPredicted RBP2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 BTN1A1Q13410 526 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 MAD2L1BPQ15013 274 aaPredicted RBP2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 CAVIN4Q5BKX8 364 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 HHATQ5VTY9 493 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 DUPD1Q68J44 220 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 MED27Q6P2C8 311 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 CASP12Q6UXS9 341 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 ASCL4Q6XD76 172 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 CYB561A3Q8NBI2 242 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 OR4A15Q8NGL6 344 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 OR51A7Q8NH64 312 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 MITD1Q8WV92 249 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 CENPNQ96H22 339 aaPredicted RBP2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 RNF170Q96K19 258 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 ZFP3Q96NJ6 502 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 C1orf50Q9BV19 199 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 CHID1Q9BWS9 393 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 CFL2Q9Y281 166 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 TNIKQ9UKE5 1360 aa2.19□□□□□ -2.06
HMGB1P28-201ENST00000507778 IGHV6-1A0A0B4J1U7 121 aa2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 A0A0G2JMP0 313 aa2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 A0A0X1KG70 313 aa2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 PRAMEF26H0Y7S4 382 aa2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 J3QT63 122 aa2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 CD28P10747 220 aa2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 PSMB2P49721 201 aa2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 MLF1P58340 268 aa2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 RPL31P62899 125 aaKnown RBP2.18□□□□□ -2.06
HMGB1P28-201ENST00000507778 IFFO1Q0D2I5 559 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms