RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KLRD1Q13241 179 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 FAM98BQ52LJ0 330 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 THAP5Q7Z6K1 395 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 FAM185AQ8N0U4 392 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 Q8N7P7 452 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 THEM6Q8WUY1 208 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 RPL3LQ92901 407 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 DGCR6LQ9BY27 220 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 RASL12Q9NYN1 266 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 ACTR3BQ9P1U1 418 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 LRP12Q9Y561 859 aa17.21■□□□□ 0.35
SQSTM1-210ENST00000506042 OR5B21A6NL26 309 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 PRR23D1E9PI22 279 aaPredicted RBP17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 PIN1P1O15428 100 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 GSC2O15499 205 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 AKR7A2O43488 359 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 PRR23D2P0DMB1 279 aaPredicted RBP17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 ATP6V1B1P15313 513 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 OPRL1P41146 370 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 MICAQ29983 383 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 SMIM21Q3B7S5 101 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 KCTD18Q6PI47 426 aaPredicted RBP17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 COMMD2Q86X83 199 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 OR8D4Q8NGM9 314 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 ANGPTL6Q8NI99 470 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 GAFA1Q96PS6 74 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 ARMC1Q9NVT9 282 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 TAGLN3Q9UI15 199 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 PITPNC1Q9UKF7 332 aa17.2■□□□□ 0.34
SQSTM1-210ENST00000506042 A0A1B0GW55 424 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 ALX3O95076 343 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 SOX14O95416 240 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 DUX4L2P0CJ85 424 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 DUX4L3P0CJ86 424 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 DUX4L4P0CJ87 422 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 DUX4L5P0CJ88 424 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 DUX4L6P0CJ89 424 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 DUX4L7P0CJ90 424 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 ARSJQ5FYB0 599 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 DUX4L9Q6RFH8 374 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 KRT77Q7Z794 578 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 ARHGAP24Q8N264 748 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 ZNRF4Q8WWF5 429 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 FAM107BQ9H098 131 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 ABCB10Q9NRK6 738 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 DUX4Q9UBX2 424 aa17.19■□□□□ 0.34
SQSTM1-210ENST00000506042 WNK1Q9H4A3 2382 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 ACOD1A6NK06 481 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 PRODHO43272 600 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 FCN3O75636 299 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 DCTN3O75935 186 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 ALDOBP05062 364 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 CLUP10909 449 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 MSX2P35548 267 aaPredicted RBP17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 EFNB2P52799 333 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 PSMA6P60900 246 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 FAM189A2Q15884 450 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 DGUOKQ16854 277 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 FAM76BQ5HYJ3 339 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 LCN1P1Q5VSP4 162 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 OR2T5Q6IEZ7 315 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 ZNF770Q6IQ21 691 aaPredicted RBP17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 PRSS45Q7RTY3 260 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 DEFB107AQ8IZN7 70 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 FGFRL1Q8N441 504 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 KLHDC1Q8N7A1 406 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 OR4F17Q8NGA8 305 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 OR2T29Q8NH02 315 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 OTOSQ8NHW6 89 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 TNFRSF14Q92956 283 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 FOXRED1Q96CU9 486 aaPredicted RBP17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 OR4F4Q96R69 305 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 CDCA4Q9BXL8 241 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 MEGF9Q9H1U4 602 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 WDR13Q9H1Z4 485 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 C1orf21Q9H246 121 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 OR51V1Q9H2C8 321 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 ZNF556Q9HAH1 456 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 USE1Q9NZ43 259 aa17.18■□□□□ 0.34
SQSTM1-210ENST00000506042 MTRF1O75570 445 aaKnown RBP17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 HMGN1P05114 100 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 HOXB6P17509 224 aaKnown RBP17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 MAGEA2P43356 314 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 GPM6AP51674 278 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 ERVFRD-1P60508 538 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 ZNF561Q8N587 486 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 OR5A2Q8NGI9 324 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 OR4Q3Q8NH05 313 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 OR5K1Q8NHB7 308 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 SEH1LQ96EE3 360 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 LAMP5Q9UJQ1 280 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 POLDIP2Q9Y2S7 368 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 U3KQV3 271 aa17.17■□□□□ 0.34
SQSTM1-210ENST00000506042 VSIG10L2P0DP72 767 aa17.16■□□□□ 0.34
SQSTM1-210ENST00000506042 PSKH1P11801 424 aa17.16■□□□□ 0.34
SQSTM1-210ENST00000506042 FAHP16930 419 aa17.16■□□□□ 0.34
SQSTM1-210ENST00000506042 RPS7P62081 194 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-210ENST00000506042 RPL31P62899 125 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-210ENST00000506042 LY6EQ16553 131 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms