RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ARRDC1Q8N5I2 433 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 ACBD4Q8NC06 268 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 TMEM104Q8NE00 496 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 SEMA6DQ8NFY4 1073 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 OR2AK2Q8NG84 335 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 OR13C8Q8NGS7 320 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 RAB3CQ96E17 227 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 SLC6A7Q99884 636 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 C1QTNF5Q9BXJ0 243 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 TINAGL1Q9GZM7 467 aaPredicted RBP9.36□□□□□ -0.91
USP4-214ENST00000491791 ASCL3Q9NQ33 180 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 IL36GQ9NZH8 169 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 KCNK7Q9Y2U2 307 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 HSPB11Q9Y547 144 aa9.36□□□□□ -0.91
USP4-214ENST00000491791 MAST4O15021 2626 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 TMEM82A0PJX8 343 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 SERPINE3A8MV23 424 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 B8ZZF3 427 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 SMLR1H3BR10 107 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 XRCC2O43543 280 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 MRPL33O75394 65 aaKnown RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 AMY2AP04746 511 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 DBHP09172 617 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 CD46P15529 392 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 PMELP40967 661 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 CNN3Q15417 329 aaKnown RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 SNAI3Q3KNW1 292 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 LGALSLQ3ZCW2 172 aaPredicted RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 RNASE10Q5GAN6 216 aaKnown RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 CLVS2Q5SYC1 327 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 ATPAF1Q5TC12 328 aaPredicted RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 TSPO2Q5TGU0 170 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 ZNF774Q6NX45 483 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 LPCAT3Q6P1A2 487 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 IGFL2Q6UWQ7 119 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 RNF144BQ7Z419 303 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 COMMD2Q86X83 199 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 ZNF101Q8IZC7 436 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 MUC20Q8N307 709 aaPredicted RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 Q8NFD4 153 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 OR2T35Q8NGX2 323 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 ST8SIA4Q92187 359 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 DVL3Q92997 716 aaPredicted RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 MRPS24Q96EL2 167 aaKnown RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 REEP6Q96HR9 211 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 ZNF845Q96IR2 970 aaPredicted RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 NKX3-1Q99801 234 aaPredicted RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 GAL3ST1Q99999 423 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 SELENOIQ9C0D9 397 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 ZNF69Q9UC07 566 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 OPN4Q9UHM6 478 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 MCTS1Q9ULC4 181 aaKnown RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 HSF4Q9ULV5 492 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 PIGLQ9Y2B2 252 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 NOSIPQ9Y314 301 aaKnown RBP9.35□□□□□ -0.91
USP4-214ENST00000491791 ZNF175Q9Y473 711 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 PIEZO2Q9H5I5 2752 aa9.35□□□□□ -0.91
USP4-214ENST00000491791 SPTA1P02549 2419 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 A0A0B4J2A0 478 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 hCG_38984A0A1B0GV85 526 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 PRSS44E7EML9 344 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 K7ENP7 123 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 SS18L1O75177 396 aaPredicted RBP9.34□□□□□ -0.91
USP4-214ENST00000491791 SYNGR4O95473 234 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 CD8AP01732 235 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 OR4E1P0C645 316 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 ZNF24P17028 368 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 ZBTB25P24278 435 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 ACKR3P25106 362 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 MAGEA5P43359 124 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 SLC6A9P48067 706 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 PER3P56645 1201 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 GNG2P59768 71 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 HGFACQ04756 655 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 LY6DQ14210 128 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 SLC10A1Q14973 349 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 INO80CQ6PI98 192 aaPredicted RBP9.34□□□□□ -0.91
USP4-214ENST00000491791 LHFPL2Q6ZUX7 228 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 HOGA1Q86XE5 327 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 CHST4Q8NCG5 386 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 PXT1Q8NFP0 134 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 ABHD3Q8WU67 409 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 PIGTQ969N2 578 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 MRGPRFQ96AM1 343 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 NICN1Q9BSH3 213 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 ZDHHC11Q9H8X9 412 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 BEX1Q9HBH7 125 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 CA10Q9NS85 328 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 B3GNT2Q9NY97 397 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 SHPKQ9UHJ6 478 aa9.34□□□□□ -0.91
USP4-214ENST00000491791 MYO18BQ8IUG5 2567 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 MEIS3P1A6NDR6 274 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 TUBAL3A6NHL2 446 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 M0QYG6 137 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 SOCS1O15524 211 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 MPIG6BO95866 241 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 RLN1P04808 185 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 CELA3AP09093 270 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 B4GALT1P15291 398 aa9.33□□□□□ -0.92
USP4-214ENST00000491791 MGMTP16455 207 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms