RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 HCP5Q6MZN7 132 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 BEND2Q8NDZ0 799 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 OR10G2Q8NGC3 310 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 OR2T29Q8NH02 315 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 TEX47Q8TBZ9 253 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 MED30Q96HR3 178 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 RNF170Q96K19 258 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 OR51V1Q9H2C8 321 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 METTL8Q9H825 291 aaKnown RBP10.12□□□□□ -0.79
CPSF3-204ENST00000489403 REEP1Q9H902 201 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 NDE1Q9NXR1 346 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 FBLN5Q9UBX5 448 aa10.12□□□□□ -0.79
CPSF3-204ENST00000489403 IGKV1D-17A0A075B6S4 117 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 OR2AT4A6NND4 320 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 H3BN98 237 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 SELENOFO60613 162 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 RHBDL1O75783 438 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 ACAA1P09110 424 aaPredicted RBP10.11□□□□□ -0.79
CPSF3-204ENST00000489403 GLRA1P23415 457 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 GABRA5P31644 462 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 GABRA2P47869 451 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 GPM6AP51674 278 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 HERPUD1Q15011 391 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 HIST2H2BDQ6DRA6 164 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 CD300LDQ6UXZ3 194 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 CPLX4Q7Z7G2 160 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.11□□□□□ -0.79
CPSF3-204ENST00000489403 ZDHHC23Q8IYP9 409 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 ZNRF1Q8ND25 227 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 OR8B12Q8NGG6 310 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 OTOSQ8NHW6 89 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 PPP1R35Q8TAP8 253 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 THEM6Q8WUY1 208 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 DUS3LQ96G46 650 aaKnown RBP10.11□□□□□ -0.79
CPSF3-204ENST00000489403 AJUBAQ96IF1 538 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 TAS2R1Q9NYW7 299 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 ZNF222Q9UK12 451 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 SIGLEC9Q9Y336 463 aa10.11□□□□□ -0.79
CPSF3-204ENST00000489403 G3V4G9 280 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 PSG2P11465 335 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 POU1F1P28069 291 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 EFNB2P52799 333 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 PSMA6P60900 246 aaKnown RBP10.1□□□□□ -0.79
CPSF3-204ENST00000489403 BLMHQ13867 455 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 LY6EQ16553 131 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 LCN8Q6JVE9 175 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 Q6ZTK2 550 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 TMEM185AQ8NFB2 350 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 OR51G2Q8NGK0 314 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 RORBQ92753 470 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 FEVQ99581 238 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 SSX3Q99909 188 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 FOXJ3Q9UPW0 622 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 KLHDC2Q9Y2U9 406 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 LRP12Q9Y561 859 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 MAB21L2Q9Y586 359 aa10.1□□□□□ -0.79
CPSF3-204ENST00000489403 ZNF732B4DXR9 585 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 PRR23D1E9PI22 279 aaPredicted RBP10.09□□□□□ -0.79
CPSF3-204ENST00000489403 H0YAE9 185 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 ANGPTL7O43827 346 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 PRR23D2P0DMB1 279 aaPredicted RBP10.09□□□□□ -0.79
CPSF3-204ENST00000489403 PAICSP22234 425 aaKnown RBP10.09□□□□□ -0.79
CPSF3-204ENST00000489403 PAX6P26367 422 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 MS4A2Q01362 244 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 BEAN1Q3B7T3 259 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 FAM98BQ52LJ0 330 aaKnown RBP10.09□□□□□ -0.79
CPSF3-204ENST00000489403 CEP78Q5JTW2 689 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 PLBD1Q6P4A8 553 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 CRIP3Q6Q6R5 217 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 KRT74Q7RTS7 529 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 MKXQ8IYA7 352 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 FAM185AQ8N0U4 392 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 ZNF454Q8N9F8 522 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 PAPD5Q8NDF8 572 aaKnown RBP10.09□□□□□ -0.79
CPSF3-204ENST00000489403 OR5D13Q8NGL4 314 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 FAM81AQ8TBF8 368 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 HIST1H2AAQ96QV6 131 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 MEGF9Q9H1U4 602 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 OR51I2Q9H344 312 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 MUC13Q9H3R2 512 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 NIPAL2Q9H841 368 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 C19orf12Q9NSK7 152 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 ARL2BPQ9Y2Y0 163 aa10.09□□□□□ -0.79
CPSF3-204ENST00000489403 SF3B6Q9Y3B4 125 aaKnown RBP10.09□□□□□ -0.79
CPSF3-204ENST00000489403 TRBV23-1A0A0A0MS06 115 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 MEGF11A6BM72 1044 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 ARRDC5A6NEK1 342 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 PRODHO43272 600 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 DCTN3O75935 186 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 OPN1MWP04001 364 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 OPN1MW2P0DN77 364 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 OPN1MW3P0DN78 364 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 KIR2DS4P43632 304 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 GNG3P63215 75 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 LRRC75BQ2VPJ9 315 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 CEACAM21Q3KPI0 293 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 DMRTC1Q5HYR2 192 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 SAMD5Q5TGI4 173 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 TRPM8Q7Z2W7 1104 aa10.08□□□□□ -0.8
CPSF3-204ENST00000489403 DHFR2Q86XF0 187 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms