RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SSTP61278 116 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 DCAF7P61962 342 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 HHEXQ03014 270 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 RPUSD3Q6P087 351 aaKnown RBP11.73□□□□□ -0.53
USP40-214ENST00000483519 COMMD2Q86X83 199 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 SNIP1Q8TAD8 396 aaKnown RBP11.73□□□□□ -0.53
USP40-214ENST00000483519 ADIPOR1Q96A54 375 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 KCNK17Q96T54 332 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 S100A13Q99584 98 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 C19orf12Q9NSK7 152 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 LSM5Q9Y4Y9 91 aaKnown RBP11.73□□□□□ -0.53
USP40-214ENST00000483519 ATG2BQ96BY7 2078 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 WISP1O95388 367 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 HCKP08631 526 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 NME1P15531 152 aaKnown RBP11.73□□□□□ -0.53
USP40-214ENST00000483519 HOXA5P20719 270 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 CHATP28329 748 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 S100A2P29034 98 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 PTGER4P35408 488 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 SLC35A1P78382 337 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 DEFA6Q01524 100 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 CHRFAM7AQ494W8 412 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 GALNTL5Q7Z4T8 443 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 SGPP2Q8IWX5 399 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 UBALD2Q8IYN6 164 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 LFNGQ8NES3 379 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 OR51E1Q8TCB6 317 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 GABRG3Q99928 467 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 OR10A2Q9H208 303 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 CHRDQ9H2X0 955 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 TMEM150CB9EJG8 249 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 OR2C1O95371 312 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 SLC34A2O95436 690 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 SRFP11831 508 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 HOXB2P14652 356 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 DHPSP49366 369 aaPredicted RBP11.73□□□□□ -0.53
USP40-214ENST00000483519 ZNF84P51523 738 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 PLCXD2Q0VAA5 305 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 KIAA0141Q14154 515 aaPredicted RBP11.73□□□□□ -0.53
USP40-214ENST00000483519 HLA-DQA1Q5Y7H0 255 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 PRR7Q8TB68 274 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 GPER1Q99527 375 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 PLA2G2FQ9BZM2 168 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.73□□□□□ -0.53
USP40-214ENST00000483519 SLC2A4RGQ9NR83 387 aa11.73□□□□□ -0.53
USP40-214ENST00000483519 CACNA1IQ9P0X4 2223 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 E5RGE8 158 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 J3KRW8 73 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 PRH1P02810 166 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 AKT2P31751 481 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 CDX1P47902 265 aaPredicted RBP11.72□□□□□ -0.53
USP40-214ENST00000483519 ZP4Q12836 540 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 CLINT1Q14677 625 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 PPA1Q15181 289 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 HEPN1Q6WQI6 88 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 PPP1R3BQ86XI6 285 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 SULF2Q8IWU5 870 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 OR5AS1Q8N127 324 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 C11orf40Q8WZ69 217 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 TCTN2Q96GX1 697 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 GINS3Q9BRX5 216 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 NRSN2Q9GZP1 204 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 NSG2Q9Y328 171 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 ARID1BQ8NFD5 2236 aaPredicted RBP11.72□□□□□ -0.53
USP40-214ENST00000483519 NPIPB13A6NJU9 1138 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 NPIPB4C9JG80 1138 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 FTCDNL1E5RQL4 147 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 P2RY1P47900 373 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 HSD11B2P80365 405 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 ZNF239Q16600 458 aaKnown RBP11.72□□□□□ -0.53
USP40-214ENST00000483519 C9orf152Q5JTZ5 239 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 Q6ZSR6 202 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 ABHD12BQ7Z5M8 362 aaPredicted RBP11.72□□□□□ -0.53
USP40-214ENST00000483519 ERGIC1Q969X5 290 aa11.72□□□□□ -0.53
USP40-214ENST00000483519 LRP4O75096 1905 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 IGKV1D-43A0A0B4J1Z2 117 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 CDC14CA4D256 554 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 MS4A18H0YCH9 400 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 H0YIG0 161 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 TSPAN2O60636 221 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 IGKV3-11P04433 115 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 RD3LP0DJH9 198 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 COL9A1P20849 921 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 RPS23P62266 143 aaKnown RBP11.71□□□□□ -0.53
USP40-214ENST00000483519 MS4A18Q3C1V0 323 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 GGNBP1Q5YKI7 109 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 RNF144BQ7Z419 303 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 PNLDC1Q8NA58 520 aaKnown RBP11.71□□□□□ -0.53
USP40-214ENST00000483519 OR51T1Q8NGJ9 327 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 GPR119Q8TDV5 335 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 RPP25Q9BUL9 199 aaKnown RBP11.71□□□□□ -0.53
USP40-214ENST00000483519 SMDT1Q9H4I9 107 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 HDGFL3Q9Y3E1 203 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 FBXO7Q9Y3I1 522 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 MMACHCQ9Y4U1 282 aa11.71□□□□□ -0.53
USP40-214ENST00000483519 TMEM184BQ9Y519 407 aaPredicted RBP11.71□□□□□ -0.53
USP40-214ENST00000483519 A0A1W2PP11 408 aa11.71□□□□□ -0.54
USP40-214ENST00000483519 A0A1W2PQF6 199 aa11.71□□□□□ -0.54
USP40-214ENST00000483519 IL11P20809 199 aa11.71□□□□□ -0.54
USP40-214ENST00000483519 RPS10P46783 165 aaKnown RBP11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms