RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 REEP3Q6NUK4 255 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 H3F3CQ6NXT2 135 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 LRRN1Q6UXK5 716 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 HIST2H3AQ71DI3 136 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 UTS2BQ765I0 119 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 GLT6D1Q7Z4J2 308 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 NKAIN4Q8IVV8 208 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 MFSD6LQ8IWD5 586 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 GPR65Q8IYL9 337 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 PYROXD2Q8N2H3 581 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ZNF525Q8N782 197 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 OR4M1Q8NGD0 313 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 OR52H1Q8NGJ2 320 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 OR5J2Q8NH18 312 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 CDC26Q8NHZ8 85 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 GNPDA2Q8TDQ7 276 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ST7LQ8TDW4 575 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 SFT2D1Q8WV19 159 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ASZ1Q8WWH4 475 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 HIST1H2ACQ93077 130 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 S100A16Q96FQ6 103 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 SLC41A3Q96GZ6 507 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 OR2A7Q96R45 310 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 MRPL45Q9BRJ2 306 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 UTP23Q9BRU9 249 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 EDEM2Q9BV94 578 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 SEC11CQ9BY50 192 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ARL6Q9H0F7 186 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ALX4Q9H161 411 aaPredicted RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 REEP4Q9H6H4 257 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 PLEKHA1Q9HB21 404 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 NRN1Q9NPD7 142 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 NANSQ9NR45 359 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 KLHL28Q9NXS3 571 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 COA4Q9NYJ1 87 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ZNF226Q9NYT6 803 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 CALML5Q9NZT1 146 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 METTL1Q9UBP6 276 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 VPS29Q9UBQ0 182 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 RPS6KB2Q9UBS0 482 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 CELA1Q9UNI1 258 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ZNF256Q9Y2P7 627 aaPredicted RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 KCNIP3Q9Y2W7 256 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ZNF236Q9UL36 1845 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 TRIP11Q15643 1979 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 PDCD11Q14690 1871 aaKnown RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 SYNJ2BP-COX16A0A087WUM0 186 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 CCL15-CCL14A0A0B4J2E2 113 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 MCRIP1C9JLW8 97 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 F5H5P2 479 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 OR10H3O60404 316 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 EIF1BO60739 113 aaKnown RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 SNAI1O95863 264 aaPredicted RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 TRBC1P01850 177 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 HLA-DQB2P05538 268 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 NMBP08949 121 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 FBP1P09467 338 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 GABRA1P14867 456 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 ZNF250P15622 560 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 ACP1P24666 158 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 SAA4P35542 130 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 CHI3L1P36222 383 aaPredicted RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 ATP5C1P36542 298 aaKnown RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 EIF1P41567 113 aaKnown RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 CD86P42081 329 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 RPL35P42766 123 aaKnown RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 CRATP43155 626 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 XCR1P46094 333 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 FOXA1P55317 472 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 RAB8AP61006 207 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 ACTA2P62736 377 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 ACTG2P63267 376 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 CDK6Q00534 326 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 NDPQ00604 133 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 TSTA3Q13630 321 aaPredicted RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 PEA15Q15121 130 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 PON3Q15166 354 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 RGNQ15493 299 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 CD226Q15762 336 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 ZBTB6Q15916 424 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 CCL15Q16663 113 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 UBE2NLQ5JXB2 153 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 HIST2H3PS2Q5TEC6 136 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 NOXRED1Q6NXP6 359 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 SSX9Q7RTT3 188 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 TMEM179BQ7Z7N9 219 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 OR4M2Q8NGB6 313 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 OR10K1Q8NGX5 313 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 OR52P1PQ8NH57 321 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 STOML3Q8TAV4 291 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 SMIM4Q8WVI0 70 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 BADQ92934 168 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 RAD51AP1Q96B01 352 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 TEX37Q96LM6 180 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 PFDN5Q99471 154 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 PKMYT1Q99640 499 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 GPR21Q99679 349 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms