RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ZNF610Q8N9Z0 462 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 TOMM40LQ969M1 308 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 MALSU1Q96EH3 234 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 SSX3Q99909 188 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 S1PR5Q9H228 398 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 OPA3Q9H6K4 179 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 OSGIN2Q9Y236 505 aa10.34□□□□□ -0.75
CPSF3-202ENST00000460593 C5orf63A6NC05 138 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 C17orf105B2RV13 164 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 F10P00742 488 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 MBPP02686 304 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-202ENST00000460593 HCKP08631 526 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 FOXK1P85037 733 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 RHEBQ15382 184 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 SSX2Q16385 188 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 C21orf62-AS1Q17RA5 79 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 Q7L0L9 218 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 MAMDC2Q7Z304 686 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-202ENST00000460593 TGIF2LXQ8IUE1 241 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 PTX4Q96A99 478 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 TCTN2Q96GX1 697 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 TMEM59Q9BXS4 323 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 PBOV1Q9GZY1 135 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 SDHAF3Q9NRP4 125 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 MYO9BQ13459 2157 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 H3BQ15 152 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 PHOX2AO14813 284 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 CLPSP04118 112 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 HEXBP07686 556 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 HSD11B1P28845 292 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 APOBEC1P41238 236 aaKnown RBP10.33□□□□□ -0.76
CPSF3-202ENST00000460593 TM4SF4P48230 202 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 FOXL2P58012 376 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 ZFP62Q8NB50 900 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-202ENST00000460593 MMABQ96EY8 250 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-202ENST00000460593 TOX2Q96NM4 488 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 TXNIPQ9H3M7 391 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 ZNF581Q9P0T4 197 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 LUZP4Q9P127 313 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 ZNF319Q9P2F9 582 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 B3GALT5Q9Y2C3 310 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 POMT1Q9Y6A1 747 aa10.33□□□□□ -0.76
CPSF3-202ENST00000460593 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 HSPB2A8KAH6 182 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 A8MVM7 634 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 TERTO14746 1132 aaKnown RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 TNFSF12O43508 249 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 OMGP23515 440 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 CHATP28329 748 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 FAM3AP98173 230 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 ELOBQ15370 118 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 HSPB2Q16082 182 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 OR2T2Q6IF00 324 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 OPN5Q6U736 354 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 ABHD12BQ7Z5M8 362 aaPredicted RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 CPEB2Q7Z5Q1 589 aaKnown RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 PEG10Q86TG7 708 aaKnown RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 NAXEQ8NCW5 288 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 DAZLQ92904 295 aaKnown RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 C1orf147Q96MC9 270 aaPredicted RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 ZNF2Q9BSG1 426 aaPredicted RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 ELL3Q9HB65 397 aaPredicted RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 TRAV36DV7A0A075B6V5 113 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 SHISA8B8ZZ34 492 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 ZNF20P17024 532 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 G0S2P27469 103 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 UBE2KP61086 200 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 C1orf61Q13536 156 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 VAX1Q5SQQ9 334 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 REC114Q7Z4M0 266 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 HIST3H2BBQ8N257 126 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 OR51T1Q8NGJ9 327 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 FAM206AQ9NX38 181 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 VSX1Q9NZR4 365 aaPredicted RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 MEMO1Q9Y316 297 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 LIPGQ9Y5X9 500 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 PPP1R2P9O14990 202 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 CDAP32320 146 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 C16orf47Q6ZP98 133 aaPredicted RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 LYZL2Q7Z4W2 148 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 LHFPL1Q86WI0 220 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 OR52M1Q8NGK5 317 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 OR10S1Q8NGN2 331 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 FRZBQ92765 325 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 SLAMF6Q96DU3 332 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 LIN37Q96GY3 246 aaPredicted RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 ADAM19Q9H013 955 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 B3GALT1Q9Y5Z6 326 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 SHANK1Q9Y566 2161 aa10.32□□□□□ -0.76
CPSF3-202ENST00000460593 MUC22E2RYF6 1773 aaPredicted RBP10.32□□□□□ -0.76
CPSF3-202ENST00000460593 DHRS7CA6NNS2 312 aa10.31□□□□□ -0.76
CPSF3-202ENST00000460593 ADAM10O14672 748 aa10.31□□□□□ -0.76
CPSF3-202ENST00000460593 FKTNO75072 461 aa10.31□□□□□ -0.76
CPSF3-202ENST00000460593 NXPH3O95157 252 aa10.31□□□□□ -0.76
CPSF3-202ENST00000460593 C5AR1P21730 350 aa10.31□□□□□ -0.76
CPSF3-202ENST00000460593 RRADP55042 308 aa10.31□□□□□ -0.76
CPSF3-202ENST00000460593 DLK1P80370 383 aa10.31□□□□□ -0.76
CPSF3-202ENST00000460593 SGCBQ16585 318 aa10.31□□□□□ -0.76
CPSF3-202ENST00000460593 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.31□□□□□ -0.76
CPSF3-202ENST00000460593 CHRFAM7AQ494W8 412 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms