RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 CSNK2A3Q8NEV1 391 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 POM121L2Q96KW2 1035 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 C1orf147Q96MC9 270 aaPredicted RBP9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 GAL3ST1Q99999 423 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 SCNM1Q9BWG6 230 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 LPAR5Q9H1C0 372 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 C20orf85Q9H1P6 137 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 GPR173Q9NS66 373 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 ING3Q9NXR8 418 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 MYEF2Q9P2K5 600 aaKnown RBP9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 FREM1Q5H8C1 2179 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 CRHP06850 196 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 CPT2P23786 658 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 CBX5P45973 191 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 ID4P47928 161 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 RPS27AP62979 156 aaKnown RBP9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 MEF2DQ14814 521 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 RBMS2Q15434 407 aaKnown RBP9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 TBC1D28Q2M2D7 210 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 MOGAT2Q3SYC2 334 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 KRTCAP3Q53RY4 240 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 MED12LQ86YW9 2145 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 GABRG1Q8N1C3 465 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 C1orf162Q8NEQ5 155 aaPredicted RBP9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 NPRL2Q8WTW4 380 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 PIGTQ969N2 578 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 RAB3CQ96E17 227 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 BOD1Q96IK1 185 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 TAAR6Q96RI8 345 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 METTL9Q9H1A3 318 aa9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 MOV10Q9HCE1 1003 aaKnown RBP9.16□□□□□ -0.94
VIPAS39-203ENST00000448935 FAM186AA6NE01 2351 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 TMEM235A6NFC5 223 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 RRP8O43159 456 aaKnown RBP9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 WDR1O75083 606 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 NDUFB6O95139 128 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 RAB3DO95716 219 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 CSTBP04080 98 aaKnown RBP9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 TMEM225BP0DP42 221 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 TBPP20226 339 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 EPHA1P21709 976 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 HOXC12P31275 282 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 GNG2P59768 71 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 CD300CQ08708 224 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 ZMYND11Q15326 602 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 SLC22A6Q4U2R8 563 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 HIKESHIQ53FT3 197 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 METTL11BQ5VVY1 283 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 CD276Q5ZPR3 534 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 INO80CQ6PI98 192 aaPredicted RBP9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 GCNT2Q8N0V5 402 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 FAM89BQ8N5H3 189 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 CNEP1R1Q8N9A8 125 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 OR51T1Q8NGJ9 327 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 OR4C16Q8NGL9 310 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 OR5M9Q8NGP3 310 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 MED30Q96HR3 178 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 GPR137Q96N19 417 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 TM2D1Q9BX74 207 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 SELENOIQ9C0D9 397 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 MED28Q9H204 178 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 ELL3Q9HB65 397 aaPredicted RBP9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 NOX3Q9HBY0 568 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 GPN1Q9HCN4 374 aaPredicted RBP9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 IFT46Q9NQC8 304 aa9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.15□□□□□ -0.94
VIPAS39-203ENST00000448935 A0A1B0GUH1 482 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 FAM230AA0A1W2PPH8 454 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 MBD3L4A6NDZ8 208 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 MBD3L3A6NE82 208 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 MBD3L5A6NJ08 208 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 ZNF736B4DX44 427 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 HOXD4P09016 255 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 HIST1H1DP16402 221 aaKnown RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 MGMTP16455 207 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 IGHV1-2P23083 117 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 MECP2P51608 486 aaKnown RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 PER3P56645 1201 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 ZP1P60852 638 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 TNK1Q13470 666 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 PPA1Q15181 289 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 RSU1Q15404 277 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 ZFP69Q49AA0 526 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 ATAD3CQ5T2N8 411 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 PLCXD3Q63HM9 321 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 ZNF585AQ6P3V2 769 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 FAM180AQ6UWF9 173 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 MOB3CQ70IA8 216 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 TRAPPC6BQ86SZ2 158 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 MDP1Q86V88 176 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 FJX1Q86VR8 437 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 TCTE3Q8IZS6 198 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 RBMXL3Q8N7X1 1067 aaKnown RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 C9orf106Q8NAJ2 232 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 TMEM104Q8NE00 496 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 SLC30A7Q8NEW0 376 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 PXT1Q8NFP0 134 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 MBD3L2Q8NHZ7 208 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 PIGCQ92535 297 aa9.14□□□□□ -0.95
VIPAS39-203ENST00000448935 DACT3Q96B18 629 aaPredicted RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms