RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 TINAGQ9UJW2 476 aa9.38□□□□□ -0.91
CUX1-205ENST00000425244 PCSK5Q92824 1860 aa9.38□□□□□ -0.91
CUX1-205ENST00000425244 C21orf140B9A014 251 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 SCGNO76038 276 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 DKK1O94907 266 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 IGHEP01854 428 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 ZNF17P17021 662 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 SSR4P51571 173 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 SSTP61278 116 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 MICBQ29980 383 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 ZNF529Q6P280 563 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 TMPPEQ6ZT21 453 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 OR10K1Q8NGX5 313 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 KCNG3Q8TAE7 436 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 ARHGAP5-AS1Q96IT6 56 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 UCN2Q96RP3 112 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 RBM24Q9BX46 236 aaKnown RBP9.37□□□□□ -0.91
CUX1-205ENST00000425244 GPR87Q9BY21 358 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 WDR13Q9H1Z4 485 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 FN3KRPQ9HA64 309 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 HPF1Q9NWY4 346 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 HDGFL3Q9Y3E1 203 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 NCOA6Q14686 2063 aaPredicted RBP9.37□□□□□ -0.91
CUX1-205ENST00000425244 TRAV20A0A0B4J274 112 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 LINC00587B1AMM8 73 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 F8W036 122 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 GFRA3O60609 400 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 NDUFS6O75380 124 aaKnown RBP9.37□□□□□ -0.91
CUX1-205ENST00000425244 RAD51DO75771 328 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 CD8AP01732 235 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 CYC1P08574 325 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 CCL3P10147 92 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 SELLP14151 372 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 MGMTP16455 207 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 STARP49675 285 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 BTN1A1Q13410 526 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 LPCAT3Q6P1A2 487 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 PGAP1Q75T13 922 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 DOK3Q7L591 496 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 ZDHHC22Q8N966 263 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 FADS6Q8N9I5 356 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 MITD1Q8WV92 249 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 MAFIPQ8WZ33 124 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 ZNF385AQ96PM9 386 aaKnown RBP9.37□□□□□ -0.91
CUX1-205ENST00000425244 ST6GALNAC5Q9BVH7 336 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 PRR13Q9NZ81 148 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 GPR160Q9UJ42 338 aa9.37□□□□□ -0.91
CUX1-205ENST00000425244 A0A0D9SG52 128 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 OR5H15A6NDH6 313 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 NPIPA2E9PIF3 369 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 NPIPA3F8WFD2 350 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 HTR3BO95264 441 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 CHRM2P08172 466 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 UBBP0CG47 229 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 LIFP15018 202 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 HIST1H1DP16402 221 aaKnown RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 BPIFB3P59826 476 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 RPS27AP62979 156 aaKnown RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 UBA52P62987 128 aaKnown RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 ZNF273Q14593 569 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 ZNF124Q15973 351 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 PHYHD1Q5SRE7 291 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 LINC00696Q6ZRV3 163 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 OR51T1Q8NGJ9 327 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 THAP6Q8TBB0 222 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 MBD2Q9UBB5 411 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 DKKL1Q9UK85 242 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 TNFSF18Q9UNG2 199 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 IGKV1-9A0A0C4DH69 117 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 EFSO43281 561 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 HPP00738 406 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 FAHP16930 419 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 AMY2BP19961 511 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 MSR1P21757 451 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 CALCRP30988 508 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 HOXA1P49639 335 aaPredicted RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 GRB2P62993 217 aaKnown RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 SLC9A3R2Q15599 337 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 ELP2Q6IA86 826 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 JMJD6Q6NYC1 403 aaPredicted RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 BOLLQ8N9W6 283 aaKnown RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 C1orf147Q96MC9 270 aaPredicted RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 SAV1Q9H4B6 383 aaPredicted RBP9.36□□□□□ -0.91
CUX1-205ENST00000425244 ASCL3Q9NQ33 180 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 ZZEF1O43149 2961 aa9.36□□□□□ -0.91
CUX1-205ENST00000425244 F5H0A9 414 aaPredicted RBP9.35□□□□□ -0.91
CUX1-205ENST00000425244 SDCBPO00560 298 aaPredicted RBP9.35□□□□□ -0.91
CUX1-205ENST00000425244 SIGLEC5O15389 551 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 IL2RAP01589 272 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 SERPINA2P20848 420 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 SERPINF1P36955 418 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 RIPPLY1Q0D2K3 151 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 ACER2Q5QJU3 275 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 DCAF10Q5QP82 559 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 OPN5Q6U736 354 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 OR2W3Q7Z3T1 314 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 C1QL2Q7Z5L3 287 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 FAM219AQ8IW50 185 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 KCNRGQ8N5I3 272 aa9.35□□□□□ -0.91
CUX1-205ENST00000425244 PNLDC1Q8NA58 520 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms