RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 WDFY1Q8IWB7 410 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 C5orf34Q96MH7 638 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 DUSP15Q9H1R2 295 aaPredicted RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 HRASLS2Q9NWW9 162 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 ATXN7L1Q9ULK2 861 aaPredicted RBP9.44□□□□□ -0.9
USP54-204ENST00000422491 NSG2Q9Y328 171 aa9.44□□□□□ -0.9
USP54-204ENST00000422491 LINC01553A4QN01 128 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 OR5H15A6NDH6 313 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 BTBD17A6NE02 478 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 OR5H1A6NKK0 313 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 H0Y8X5 98 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 SCGB1D2O95969 90 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 DHPSP49366 369 aaPredicted RBP9.43□□□□□ -0.9
USP54-204ENST00000422491 PDZD11Q5EBL8 140 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 BEND4Q6ZU67 534 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 ZNF321PQ8N8H1 164 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 APCDD1LQ8NCL9 501 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 RNASE11Q8TAA1 199 aaKnown RBP9.43□□□□□ -0.9
USP54-204ENST00000422491 JSRP1Q96MG2 331 aaPredicted RBP9.43□□□□□ -0.9
USP54-204ENST00000422491 ADOQ96SZ5 270 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.43□□□□□ -0.9
USP54-204ENST00000422491 A0A1B0GV50 99 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 TLCD2A6NGC4 264 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 FOXI3A8MTJ6 420 aaPredicted RBP9.43□□□□□ -0.9
USP54-204ENST00000422491 TSTD3H0UI37 97 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 GPR137BO60478 399 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 IFNA21P01568 189 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 SERPINA2P20848 420 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 GPM6BQ13491 265 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 SSX2Q16385 188 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 GALNTL5Q7Z4T8 443 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 MFSD8Q8NHS3 518 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 GPBAR1Q8TDU6 330 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 PRO1933Q9H354 126 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 NELFAQ9H3P2 528 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 PTPRSQ13332 1948 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 TMEM131Q92545 1883 aa9.43□□□□□ -0.9
USP54-204ENST00000422491 TGIF2-C20orf24A0A0A6YYL0 155 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 CRYM-AS1A6NIL9 109 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 CLDN4O14493 209 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 HSD17B6O14756 317 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 HEXBP07686 556 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 TAGLN2P37802 199 aaKnown RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 NFATC4Q14934 902 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 HAGHQ16775 308 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 LBHQ53QV2 105 aaPredicted RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 PLXDC2Q6UX71 529 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 FAM89BQ8N5H3 189 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 HSD17B11Q8NBQ5 300 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 OR10S1Q8NGN2 331 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 OR13D1Q8NGV5 346 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 FAM213BQ8TBF2 198 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 RELTQ969Z4 430 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 FAM131CQ96AQ9 280 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 MISP3Q96FF7 219 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 SSX3Q99909 188 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 TBX21Q9UL17 535 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 PHF3Q92576 2039 aaKnown RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 CRTAPO75718 401 aaPredicted RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 NSA2O95478 260 aaKnown RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 PTBP3O95758 552 aaKnown RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 TRGC2P03986 189 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 SLC37A1P57057 533 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 NKX6-1P78426 367 aaPredicted RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 CCL20P78556 96 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 GPR157Q5UAW9 335 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 ZNF776Q68DI1 518 aaPredicted RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 TMEM182Q6ZP80 229 aaPredicted RBP9.42□□□□□ -0.9
USP54-204ENST00000422491 SFTPA2Q8IWL1 248 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 SGPP2Q8IWX5 399 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 PRR22Q8IZ63 422 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 OR51E1Q8TCB6 317 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 SLAMF6Q96DU3 332 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 SHDQ96IW2 340 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 NEU1Q99519 415 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 SOX7Q9BT81 388 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 TGIF2Q9GZN2 237 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 SMOC1Q9H4F8 434 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 TCFL5Q9UL49 500 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 URGCP-MRPS24S4R325 110 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 PCNX3Q9H6A9 2034 aa9.42□□□□□ -0.9
USP54-204ENST00000422491 TMED7-TICAM2A0A0A6YYA0 188 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 BLACEA4D250 179 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 RBFOX3A6NFN3 312 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 H0YL77 283 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 MKRN2OSH3BPM6 223 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 HPNP05981 417 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 CTSDP07339 412 aaPredicted RBP9.41□□□□□ -0.9
USP54-204ENST00000422491 ZNF20P17024 532 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 KLK2P20151 261 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 IL11P20809 199 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 GJA4P35212 333 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 CEACAM6P40199 344 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 AFF3P51826 1226 aaKnown RBP9.41□□□□□ -0.9
USP54-204ENST00000422491 PRTGQ2VWP7 1150 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 HIST2H3PS2Q5TEC6 136 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 DNM1P34Q6PK57 102 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 SULF2Q8IWU5 870 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 OR10AD1Q8NGE0 317 aa9.41□□□□□ -0.9
USP54-204ENST00000422491 M1APQ8TC57 530 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms